SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene21632

Length: 355 nt

UniGene Fasta

>biog3_v1.0_unigene21632
GAGGAAGGATCATTTGATTGGTTCAAGGGAGTCATGAATGAAGTGGCAGAAATTGATCAAAAGGGCATAATTGAGTTGTGTAACTATTGCACAAGTGTTTATGAAGAGGGTGATGCTCGATCAGCATTGATCGCTATGTTGCAGGCACTAAATCATGCCAAACATGGTGTTGATATTGTATCGGGCACCAGGGTTTGCACACACTTTGCCAAGCCTAATTGGAGACATTCTTCAAGAATGTTGCTCTCAAGCACAAAGACTCCAGAGTGGTTATGATTTTCTCCAACTCCAGAGTGGGGGTTTTCTACTGTGGTCCTGCGGCTCTTATTGACGATTTGAGGCAGCTTTCACTGGA

Ace file of the UniGene biog3_v1.0_unigene21632

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7695	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Respiratory burst oxidase protein 1 (Fragment) n=1 Tax=Picea abies RepID=E9N9T3_PICAB	-	-	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	respiratory burst oxidase homolog protein c-like isoform 1	-	-	84%

Source	ECs	Term	Type	e value	Identity
Blast2go	Peroxidase.	EC:1.11.1.7	-	0.0	84%

Source	KEGGs	Term	Type	Identity
Blast2go	Phenylalanine metabolism	00360		84%
Blast2go	Methane metabolism	00680		84%
Blast2go	Phenylpropanoid biosynthesis	00940		84%
Blast2go	Biosynthesis of phenylpropanoids	01061		84%
Blast2go	Metabolic pathways	01100		84%
Blast2go	Biosynthesis of secondary metabolites	01110		84%
Blast2go	Oxidoreductases, Acting on NADH or NADPH, With a oxygen as acceptor.	EC:1.6.3.-	-	84%

Source	GOs	Term	Type	Identity
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	84%
Blast2go	flavin adenine dinucleotide binding	GO:0050660	Molecular Function	84%
Blast2go	iron ion binding	GO:0005506	Molecular Function	84%
Blast2go	peroxidase activity	GO:0004601	Molecular Function	84%
Blast2go	electron carrier activity	GO:0009055	Molecular Function	84%
Blast2go	calcium ion binding	GO:0005509	Molecular Function	84%
Blast2go	oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor	GO:0050664	Molecular Function	84%
Blast2go	integral to membrane	GO:0016021	Cellular Component	84%

Source	InterPros	Term	Type	Identity
Sma3	Cytochrome b245, heavy chain	IPR000778	-	-
Sma3	Calcium-binding EF-hand	IPR002048	-	-
Sma3	EF-hand-like domain	IPR011992	-	-
Sma3	FAD-binding 8	IPR013112	-	-
Sma3	Ferric reductase, NAD binding	IPR013121	-	-
Sma3	Flavoprotein transmembrane component	IPR013130	-	-
Sma3	NADPH oxidase Respiratory burst	IPR013623	-	-
Sma3	Ferredoxin reductase-type FAD-binding domain	IPR017927	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	EF-hand	IPR018248	-	-
Sma3	EF-HAND 2	IPR018249	-	-
Sma3	Chaperonin Cpn60, conserved site	IPR018370	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5ABF5

Fln msg: Separated hits, possible frame ERROR between 228 and 231, Distance to subject end: 16 aas, your sequence is shorter than subject: 118 - 358

Fln protein: EEGSFDWFKGVMNEVAEIDQKGIIELCNYCTSVYEEGDARSALIAMLQALNHAKHGVDIVSGTRVCTHFAKPNWRxxFKNVALKHKDSRVVMIFSNSRVGVFYCGPAALIDDLRQLSL

Protein Length: 119

Fln nts: GAGGAAGGATCATTTGATTGGTTCAAGGGAGTCATGAATGAAGTGGCAGAAATTGATCAAAAGGGCATAATTGAGTTGTGTAACTATTGCACAAGTGTTTATGAAGAGGGTGATGCTCGATCAGCATTGATCGCTATGTTGCAGGCACTAAATCATGCCAAACATGGTGTTGATATTGTATCGGGCACCAGGGTTTGCACACACTTTGCCAAGCCTAATTGGAGACAxxxCTTCAAGAATGTTGCTCTCAAGCACAAAGACTCCAGAGTGGTTATGATTTTCTCCAACTCCAGAGTGGGGGTTTTCTACTGTGGTCCTGCGGCTCTTATTGACGATTTGAGGCAGCTTTCACTGGA

Fln Alignment:

biogeco3_mira_c19959___EEGSFDWFKGVMNEVAEIDQKGIIELCNYCTSVYEEGDARSALIAMLQALNHAKHGVDIVSGTRVCTHFAKPNWRHxFKNVALKHKDSRVVMIFSNSRVGVFYCGPAALIDDLRQLSL
D5ABF5__________________EEGSFDWFKGVMNEVAEIDQKGIIELHNYCTSVYEEGDARSALIAMLQALNHAKHGVDIVSGTRVCTHFAKPNWRNxFKSITLKHKDSRV---------GVFYCGPAALTDDLRQLSL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain