SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene21544

Length: 176 nt

UniGene Fasta

>biog3_v1.0_unigene21544
AATGTAGTATTCATAAAATTGATGCCCTGAAGGAGAGGCAGGGCTTCCTGTGTGCATTAATTACAGAATCAGGGACCATTGGGTCTAAGCTTTTAGGGATAGTTACAAACAGGGACTTGGATTTTGTTGCAGATAGGTATACTCAAGTTAGTGAAGTCATGACCCGGGATATTGTC

Ace file of the UniGene biog3_v1.0_unigene21544

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1342	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Inosine-5'-monophosphate dehydrogenase n=1 Tax=Picea sitchensis RepID=B8LQF1_PICSI	-	-	91%
FL-Next	sp=Inosine-5'-monophosphate dehydrogenase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	protein	-	-	75%

Source	ECs	Term	Type	e value	Identity
Blast2go	IMP dehydrogenase.	EC:1.1.1.205	-	0.0	75%

Source	KEGGs	Term	Identity
Blast2go	Purine metabolism	00230	75%
Blast2go	Drug metabolism - other enzymes	00983	75%
Blast2go	Biosynthesis of alkaloids derived from histidine and purine	01065	75%
Blast2go	Metabolic pathways	01100	75%
Blast2go	Biosynthesis of secondary metabolites	01110	75%

Source	GOs	Term	Type	Identity
Blast2go	GMP biosynthetic process	GO:0006177	Biological Process	75%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	75%
Blast2go	IMP dehydrogenase activity	GO:0003938	Molecular Function	75%
Blast2go	metal ion binding	GO:0046872	Molecular Function	75%

Source	InterPros	Term	Type	Identity
Sma3	Aldolase-type TIM barrel	IPR013785	-	-
Sma3	Cystathionine beta-synthase, core	IPR000644	-	-
Sma3	IMP dehydrogenase / GMP reductase, conserved site	IPR015875	-	-
Sma3	IMP dehydrogenase	IPR005990	-	-
Sma3	IMP dehydrogenase/GMP reductase	IPR001093	-	-
Sma3	IMP dehydrogenase-related	IPR018529	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQF1

Fln msg: Distance to subject end: 330 aas, your sequence is shorter than subject: 58 - 513

Fln protein: CSIHKIDALKERQGFLCALITESGTIGSKLLGIVTNRDLDFVADRYTQVSEVMTRDIV

Protein Length: 59

Fln nts: AATGTAGTATTCATAAAATTGATGCCCTGAAGGAGAGGCAGGGCTTCCTGTGTGCATTAATTACAGAATCAGGGACCATTGGGTCTAAGCTTTTAGGGATAGTTACAAACAGGGACTTGGATTTTGTTGCAGATAGGTATACTCAAGTTAGTGAAGTCATGACCCGGGATATTGTC

Fln Alignment:

biogeco3_mira_c19839___SIHKIDALKERQGFLCALITESGTIGSKLLGIVTNRDLDFVADRYTQVSEVMTRDIV
B8LQF1__________________SIHKIDDLKERQGFLCALVTESGTVGSKLLGIVTNRDLDFVADRYTQVSEVMTPDIV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain