SustainPineDB

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Assembly info
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene21522

Length: 195 nt

UniGene Fasta

>biog3_v1.0_unigene21522
TTTGTTGGGTTAGTGAGAACTGCTGCTGTGAGGGTTCTGGATCGATTCTCTTGGACGTTGGCGGGCGGCTTGGCTTGGATATATGCCAACTCTTGTCAGGATTCGCGGTGATGAAGACTTTGGAAGGCCTAAGTTTTCTGGTCATGTGGATACAGATCTTTTCTTGTCTCTTGCACCTCGAATGGAAGTACTTTG

Ace file of the UniGene biog3_v1.0_unigene21522

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9113	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	EIN3-binding F-box protein 1 n=1 Tax=Solanum lycopersicum RepID=Q2PQJ0_SOLLC	-	-	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Blast2go	ein3-binding f-box protein 1-like	-	-	64%

Source	InterPros	Term	Type	Identity
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Leucine-rich repeat, cysteine-containing subtype	IPR006553	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NXX4

Fln msg: Distance to subject end: 497 aas, your sequence is shorter than subject: 37 - 535

Fln protein: MPTLVRIRGDEDFGRPKFSGHVDTDLFLSLAPRMEVL

Protein Length: 38

Fln nts: TTTGTTGGGTTAGTGAGAACTGCTGCTGTGAGGGTTCTGGATCGATTCTCTTGGACGTTGGCGGGCGGCTTGGCTTGGATAT_-_ATGCCAACTCTTGTCAGGATTCGCGGTGATGAAGACTTTGGAAGGCCTAAGTTTTCTGGTCATGTGGATACAGATCTTTTCTTGTCTCTTGCACCTCGAATGGAAGTACTTTG

Fln Alignment:

biogeco3_mira_c19803___MPTLVRIRGDEDFGRPKFSGHVDTDLFLSLAPRMEVL
A9NXX4__________________MPTLVSFRGDEDFGGPKFSGRVDTDLFLSLAPRMEVL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain