SustainPineDB

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Assembly info
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SSRs
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ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene21273

Length: 278 nt

UniGene Fasta

>biog3_v1.0_unigene21273
CCAAGCAAGTCTTTCATGAGAGGCCCTGGAGATGTACAGGGATCTTTTATTGCAGAAGCTATCATTGAGCATGTTGCCTCAATTCTAGGCTTGGATGCAAATACTGTAAGAGAGAAGAACATACACACTTTTGAAAGTGCTGAACTTTTCTATGGCTCCTGTGTTGATAGCCCCCTTGCTTATACATTGCCTTCAATATGGGATAAACTGAAACGTTCTGCTTCATTGGATGATAGAAGGGAAACTATTAGAAGGTTAAACACATTAACAGATGGCTG

Ace file of the UniGene biog3_v1.0_unigene21273

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene58404	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Aldehyde oxidase 1 n=1 Tax=Lactuca sativa RepID=Q2PHF4_LACSA	-	-	5.0e-22	58%
FL-Next	sp=Putative aldehyde oxidase-like protein; Oryza sativa subsp. japonica (Rice).	-	-	0.0	57%
Blast2go	aba aldehyde oxidase	-	-	6.68114e-26	70%

Source	InterPros	Term	Type	Identity
Sma3	Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead	IPR000674	-	-
Sma3	2Fe-2S ferredoxin-type domain	IPR001041	-	-
Sma3	Molybdopterin dehydrogenase, FAD-binding	IPR002346	-	-
Sma3	[2Fe-2S]-binding	IPR002888	-	-
Sma3	CO dehydrogenase flavoprotein, C-terminal	IPR005107	-	-
Sma3	2Fe-2S ferredoxin, iron-sulphur binding site	IPR006058	-	-
Sma3	Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding	IPR008274	-	-
Sma3	Beta-grasp domain	IPR012675	-	-
Sma3	FAD-binding, type 2	IPR016166	-	-
Sma3	CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2	IPR016169	-	-
Sma3	Aldehyde oxidase/xanthine dehydrogenase	IPR016208	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q6Z351

Fln msg: Distance to subject end: 337 aas, your sequence is shorter than subject: 92 - 1342

Fln protein: PSKSFMRGPGDVQGSFIAEAIIEHVASILGLDANTVREKNIHTFESAELFYGSCVDSPLAYTLPSIWDKLKRSASLDDRRETIRRLNTLTDG

Protein Length: 93

Fln nts: CCAAGCAAGTCTTTCATGAGAGGCCCTGGAGATGTACAGGGATCTTTTATTGCAGAAGCTATCATTGAGCATGTTGCCTCAATTCTAGGCTTGGATGCAAATACTGTAAGAGAGAAGAACATACACACTTTTGAAAGTGCTGAACTTTTCTATGGCTCCTGTGTTGATAGCCCCCTTGCTTATACATTGCCTTCAATATGGGATAAACTGAAACGTTCTGCTTCATTGGATGATAGAAGGGAAACTATTAGAAGGTTAAACACATTAACAGATGGCTG

Fln Alignment:

biogeco3_mira_c19433___SKSFMRGPGDVQGSFIAEAIIEHVASILGLDANTVREKNIHTFESAELFYGSCVDSPLAYTLPSIWDKLKRSASLDDRRETIRRLNT
Q6Z351__________________SKSVMRAPGDTQGSFIAEAIIEHVAAILSLDANTVRQKNFHTYDSLVLFYPDSAGESSTYTLHSIFDRLASTSRYLQRVESIKKFNS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain