SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene20908

Length: 187 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene20908
CCATGTACTTGAAGTTAATATGGTGAGAGAGAAAAGAATTGGCCAACAACATGGCTGCTATTTTATCAAATATGCAACTATTGAGGAAGCTGAGAGAGCCATTAAAGCTCTTCACAATAAACATACATTACCAGGGGGGATCAGTCCTTTACAAGTTAGATTTGCTGATGGAGAGCGGGAGCAGCTG

Ace file of the UniGene biog3_v1.0_unigene20908 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8371	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Flowering time control protein FCA, putative n=1 Tax=Ricinus communis RepID=B9RZT3_RICCO	-	-	50%
FL-Next	Isoform Delta of Flowering time control protein FCA OS=Arabidopsis thaliana GN=FCA	-	-	62%
Blast2go	flowering time control protein	-	-	64%

Source	GOs	Term	Type	Identity
Blast2go	embryo sac development	GO:0009553	Biological Process	64%
Blast2go	regulation of flower development	GO:0009909	Biological Process	64%
Blast2go	chromatin silencing by small RNA	GO:0031048	Biological Process	64%
Blast2go	embryo development	GO:0009790	Biological Process	64%
Blast2go	RNA binding	GO:0003723	Molecular Function	64%
Blast2go	abscisic acid binding	GO:0010427	Molecular Function	64%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	64%
Blast2go	intracellular organelle part	GO:0044446	Cellular Component	64%

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	WW/Rsp5/WWP	IPR001202	-	-
Sma3	Paraneoplastic encephalomyelitis antigen	IPR002343	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3		IPR015903	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: O04425-4

Fln msg: Distance to subject end: 327 aas, your sequence is shorter than subject: 62 - 533

Fln protein: HVLEVNMVREKRIGQQHGCYFIKYATIEEAERAIKALHNKHTLPGGISPLQVRFADGEREQL

Protein Length: 63

Fln nts: CCATGTACTTGAAGTTAATATGGTGAGAGAGAAAAGAATTGGCCAACAACATGGCTGCTATTTTATCAAATATGCAACTATTGAGGAAGCTGAGAGAGCCATTAAAGCTCTTCACAATAAACATACATTACCAGGGGGGATCAGTCCTTTACAAGTTAGATTTGCTGATGGAGAGCGGGAGCAGCTG

Fln Alignment:

biogeco3_mira_c18888___HVLEVNMVREKRIGQQHGCYFIKYATIEEAERAIKALHNKHTLPGGISPLQVRFADGEREQL
O04425-4________________NVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRALHNQITLPGGTGPVQVRYADGERERI

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain