SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene20857

Length: 301 nt

UniGene Fasta

>biog3_v1.0_unigene20857
GTGATGCAGGTACGGCACAATTGGGGCTCTGCTAAGGTTGATATTATGTACAGGGCTTTAAAGTCCAAGTTTTGTACCTATTCCCATTTGTCTTCGTTTTTAGTTTCAACTGCGGGATCTGTTCTAGTTGAAGCTTCTCCTCATGACCTCTTCTGGGGAGGTGGTCGAGAAGGAGAAGGTATGAATCACCTTGGAAGGCTGCTTATGAGGATACGCGATGAGATCCTTGGAGACAATTCAGACAGTTATGGCATGGAATTATCAGCAATTCAGTCATCAAGAACATGAAAGTAAATACATT

Ace file of the UniGene biog3_v1.0_unigene20857

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene11	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	putative riboflavin biosynthesis protein ribD [Oryza sativa Japonica Group] dbj\|BAD21976.1\| putative riboflavin biosynthesis protein ribD [Oryza sativa Japonica Group]	-	-	62%
FL-Next	tr=cDNA clone:J013024H13, full insert sequence; Oryza sativa subsp. japonica (Rice).	-	-	75%
Blast2go	protein	-	-	79%

Source	ECs	Term	Type	e value	Identity
Blast2go	5-amino-6-(5-phosphoribosylamino)uracil reductase.	EC:1.1.1.193	-	0.0	79%

Source	KEGGs	Term	Type	Identity
Blast2go	Riboflavin metabolism	00740		79%
Blast2go	Metabolic pathways	01100		79%
Blast2go	Diaminohydroxyphosphoribosylaminopyrimidine deaminase.	EC:3.5.4.26	-	79%

Source	KEGGs	Term	Type	Identity
Blast2go	Riboflavin metabolism	00740		79%
Blast2go	Metabolic pathways	01100		79%
Blast2go	Phosphorylase.	EC:2.4.1.1	-	79%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Starch and sucrose metabolism	00500		0.0	79%

Source	GOs	Term	Type	Identity
Blast2go	FAD metabolic process	GO:0046443	Biological Process	79%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	79%
Blast2go	response to water deprivation	GO:0009414	Biological Process	79%
Blast2go	regulation of gene expression	GO:0010468	Biological Process	79%
Blast2go	response to temperature stimulus	GO:0009266	Biological Process	79%
Blast2go	regulation of stomatal movement	GO:0010119	Biological Process	79%
Blast2go	chloroplast organization	GO:0009658	Biological Process	79%
Blast2go	riboflavin biosynthetic process	GO:0009231	Biological Process	79%
Blast2go	cortical microtubule organization	GO:0043622	Biological Process	79%
Blast2go	response to abscisic acid stimulus	GO:0009737	Biological Process	79%
Blast2go	synapsis	GO:0007129	Biological Process	79%
Blast2go	response to high light intensity	GO:0009644	Biological Process	79%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	79%
Blast2go	5-amino-6-(5-phosphoribosylamino)uracil reductase activity	GO:0008703	Molecular Function	79%
Blast2go	protein tyrosine/serine/threonine phosphatase activity	GO:0008138	Molecular Function	79%
Blast2go	diaminohydroxyphosphoribosylaminopyrimidine deaminase activity	GO:0008835	Molecular Function	79%
Blast2go	protein binding	GO:0005515	Molecular Function	79%
Blast2go	phosphorylase activity	GO:0004645	Molecular Function	79%
Blast2go	NADP binding	GO:0050661	Molecular Function	79%
Blast2go	mitochondrion	GO:0005739	Cellular Component	79%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	79%

Source	InterPros	Term	Type	Identity
Sma3	CMP/dCMP deaminase, zinc-binding	IPR002125	-	-
Sma3	Bacterial bifunctional deaminase-reductase, C-terminal	IPR002734	-	-
Sma3	Riboflavin biosynthesis protein RibD	IPR004794	-	-
Sma3	Riboflavin-specific deaminase, C-terminal	IPR011549	-	-
Sma3	Conserved hypothetical protein CHP02464	IPR012816	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: B7EAY1

Fln msg: your sequence is shorter than subject: 96 - 401

Fln protein: VMQVRHNWGSAKVDIMYRALKSKFCTYSHLSSFLVSTAGSVLVEASPHDLFWGGGREGEGMNHLGRLLMRIRDEILGDNSDSYGMELSAIQSSRT*

Protein Length: 97

Fln nts: GTGATGCAGGTACGGCACAATTGGGGCTCTGCTAAGGTTGATATTATGTACAGGGCTTTAAAGTCCAAGTTTTGTACCTATTCCCATTTGTCTTCGTTTTTAGTTTCAACTGCGGGATCTGTTCTAGTTGAAGCTTCTCCTCATGACCTCTTCTGGGGAGGTGGTCGAGAAGGAGAAGGTATGAATCACCTTGGAAGGCTGCTTATGAGGATACGCGATGAGATCCTTGGAGACAATTCAGACAGTTATGGCATGGAATTATCAGCAATTCAGTCATCAAGAACATGA___AAGTAAATACATT

Fln Alignment:

biogeco3_mira_c18818___VRHNWGSAKVDIMYRALKSKFCTYSHLSSFLVSTAGSVLVEASPHDLFWGGGREGEGMNHLGRLLMRIRDEILG
B7EAY1__________________VRPDWDSIKIEVMYRATKRKFSTYSHLTDMLLSTAGSVLVEASPHDLFWGGGREGEGMNYLGRLLMQLRSEILG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain