SustainPineDB

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Assembly info
Unigenes
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SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene20665

Length: 304 nt

UniGene Fasta

>biog3_v1.0_unigene20665
AATGTGGCAAGAATAAAACATATGGGAGAGGAGGACAACTTCTGGTCTAGTGGTCCAACCGGTCCCTGTGGTCCCTGCTCTGAACTATATTATGTCTCCATCCTGAAAGAGGCTATGCAGGCGCAGATCTGGGAGATGATACTAGATTCATAGAATTCTATAATCTGGTTTTCATGCAATATAACCGAAAGATGATGGAACTCTAGAGATTTTACAAAACAGAAATATTGATACAGGAATGGGTCTTGAGCGCATGGCTCAGATTCTTCAGAAGGTTCCAAATAATTATGAAACAGACTTACTT

Ace file of the UniGene biog3_v1.0_unigene20665

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene42519	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Probable alanyl-tRNA synthetase, chloroplastic n=1 Tax=Populus trichocarpa RepID=SYAP_POPTR	-	-	77%
FL-Next	sp=Probable alanyl-tRNA synthetase, chloroplastic; subsp. trichocarpa).	-	-	86%
Blast2go	alanyl-trna synthetase	-	-	87%

Source	GOs	Term	Type	Identity
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	87%
Blast2go	mitochondrion	GO:0005739	Cellular Component	87%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	87%
Blast2go	membrane	GO:0016020	Cellular Component	87%

Source	InterPros	Term	Type	Identity
Sma3	Alanyl-tRNA synthetase, class IIc	IPR002318	-	-
Sma3	Phosphoesterase, DHHA1	IPR003156	-	-
Sma3	Threonyl/alanyl tRNA synthetase, SAD	IPR012947	-	-
Sma3	Alanyl-tRNA synthetase, class IIc, N-terminal	IPR018164	-	-
Sma3	Alanyl-tRNA synthetase, class IIc, core domain	IPR018165	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: B9HQZ6

Fln msg: Separated hits, possible frame ERROR between 93 and 99, and possible frame ERROR between 188 and 191, Distance to subject end: 655 aas, your sequence is shorter than subject: 102 - 994

Fln protein: NVARIKHMGEEDNFWSSGPTGPCGPCSELYxxxHPERGYAGADLGDDTRFIEFYNLVFMQYNxxDDGTLEILQNRNIDTGMGLERMAQILQKVPNNYETDLL

Protein Length: 103

Fln nts: AATGTGGCAAGAATAAAACATATGGGAGAGGAGGACAACTTCTGGTCTAGTGGTCCAACCGGTCCCTGTGGTCCCTGCTCTGAACTATATTAxxxxxxCCATCCTGAAAGAGGCTATGCAGGCGCAGATCTGGGAGATGATACTAGATTCATAGAATTCTATAATCTGGTTTTCATGCAATATAACCxxxAAGATGATGGAACTCTAGAGATTTTACAAAACAGAAATATTGATACAGGAATGGGTCTTGAGCGCATGGCTCAGATTCTTCAGAAGGTTCCAAATAATTATGAAACAGACTTACTT

Fln Alignment:

biogeco3_mira_c18540___VARIKHMGEEDNFWSSGPTGPCGPCSELYYxxHPERGYAGADLGDDTRFIEFYNLVFMQYNRxDDGTLEILQNRNIDTGMGLERMAQILQKVPNNYETDLL
B9HQZ6__________________VERIKRMGEEDNFWTSGATGPCGPCSELYYxxHPERGYKNTDLGDDSRFIEFYNLVFMQYNKxDDGSLEPLKQKNIDTGLGLERLARILQKVPNNYETDLI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain