SustainPineDB

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Assembly info
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ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene20462

Length: 394 nt

UniGene Fasta

>biog3_v1.0_unigene20462
GCTATTAGATTCATTGCAGACAATCCAGGAGTATGGTATCTGCACTGTCATCTGGAGATTCATTTGACATGGGGTCTATCAATGGCGTTCTTAACCTTGAATGGAAATGGACCTAATCAAACACTTCCTCCTCCCCCACCAGACTACCCTAAATGTTGACATGATTCGAATTTAATCACTGGATCAATTCAGACATTCTGCATTATTGATTCATTACCACCTATCTCCCATATATTTAAATTAGATTCATGTAATAACTCTAACGAGTTTATTCATGATAACTGGTTGATCCTGAGGCTTCCGTCCCATATTCCCCACAAGTTATCAATTAATAACCCATTGCAGAAGTTGTAATTCAATCATTCTATAAATGATGCCATCGAGCTCATTGTTG

Ace file of the UniGene biog3_v1.0_unigene20462

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene36882	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Laccase n=1 Tax=Pinus taeda RepID=Q9AUH9_PINTA	-	-	3.0e-38	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	71%
Blast2go	diphenol oxidase	-	-	1.82169e-44	74%

Source	GOs	Term	Type	e value	Identity
Blast2go	secondary cell wall biogenesis	GO:0009834	Biological Process	1.82169e-44	74%
Blast2go	lignin biosynthetic process	GO:0009809	Biological Process	1.82169e-44	74%
Blast2go	oxidoreductase activity	GO:0016491	Molecular Function	1.82169e-44	74%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	Oxidoreductase, molybdopterin-binding domain	IPR000572	-	-
Sma3	Multicopper oxidase, type 1	IPR001117	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Multicopper oxidase, copper-binding site	IPR002355	-	-
Sma3	Bacterial extracellular solute-binding family 1, conserved site	IPR006061	-	-
Sma3	Cupredoxin	IPR008972	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Multicopper oxidase, type 2	IPR011706	-	-
Sma3	Multicopper oxidase, type 3	IPR011707	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Laccase	IPR017761	-	-
Sma3	Glycoside hydrolase, family 1, active site	IPR018120	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PQ43

Fln msg: your sequence is shorter than subject: 53 - 559

Fln protein: AIRFIADNPGVWYLHCHLEIHLTWGLSMAFLTLNGNGPNQTLPPPPPDYPKC*

Protein Length: 54

Fln nts: GCTATTAGATTCATTGCAGACAATCCAGGAGTATGGTATCTGCACTGTCATCTGGAGATTCATTTGACATGGGGTCTATCAATGGCGTTCTTAACCTTGAATGGAAATGGACCTAATCAAACACTTCCTCCTCCCCCACCAGACTACCCTAAATGTTGA___CATGATTCGAATTTAATCACTGGATCAATTCAGACATTCTGCATTATTGATTCATTACCACCTATCTCCCATATATTTAAATTAGATTCATGTAATAACTCTAACGAGTTTATTCATGATAACTGGTTGATCCTGAGGCTTCCGTCCCATATTCCCCACAAGTTATCAATTAATAACCCATTGCAGAAGTTGTAATTCAATCATTCTATAAATGATGCCATCGAGCTCATTGTTG

Fln Alignment:

biogeco3_mira_c18249___AIRFIADNPGVWYLHCHLEIHLTWGLSMAFLTLNGNGPNQTLXXXXXDYPKC
C0PQ43__________________AIRFRADNPGVWFMHCHLEVHTTWGLKMAFVVENGDGPNQSILPPPKDLPKC

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain