SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene20419

Length: 291 nt

UniGene Fasta

>biog3_v1.0_unigene20419
GACCCGGGGTACTCTCGGAACGCATTTGACTCGGTGTATAGAATTGATTTTCATTTGCAGTGGAAGTGAAGGAATGGCGGTTGCAGGGCTCTACAGGCGCCTTCTCCCGTGCCCTCCGGCAGTGGATTTCTCCTCCCTCGAAGGCAAGGAACTTTTTCATGAGGCTCTACAAAATGGGACCATGGAGGGATTCTTTAAACTAATTTCATACTTCCAAACACAATCTGAACCTGCCTATTGCGGATTGGCTTCTCTCTCAATGGTTCTTAATGCTCTTGCAATCGATCCTGG

Ace file of the UniGene biog3_v1.0_unigene20419

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene414	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Phytochelatins synthase n=1 Tax=Allium sativum RepID=Q8GZS8_ALLSA	-	-	48%
FL-Next	sp=Glutathione gamma-glutamylcysteinyltransferase 1; Lotus japonicus.	-	-	81%
Blast2go	phytochelatin synthase	-	-	84%

Source	ECs	Term	Type	e value	Identity
Blast2go	Arsenite-transporting ATPase.	EC:3.6.3.16	-	0.0	84%
Blast2go	Cinnamyl-alcohol dehydrogenase.	EC:1.1.1.195	-	0.0	84%

Source	KEGGs	Term	Type	Identity
Blast2go	Phenylpropanoid biosynthesis	00940		84%
Blast2go	Biosynthesis of phenylpropanoids	01061		84%
Blast2go	Metabolic pathways	01100		84%
Blast2go	Biosynthesis of secondary metabolites	01110		84%
Blast2go	Glutathione gamma-glutamylcysteinyltransferase.	EC:2.3.2.15	-	84%

Source	GOs	Term	Type	Identity
Blast2go	arsenite transport	GO:0015700	Biological Process	84%
Blast2go	indole glucosinolate catabolic process	GO:0042344	Biological Process	84%
Blast2go	immune response	GO:0006955	Biological Process	84%
Blast2go	phytochelatin biosynthetic process	GO:0046938	Biological Process	84%
Blast2go	defense response by callose deposition in cell wall	GO:0052544	Biological Process	84%
Blast2go	lignin biosynthetic process	GO:0009809	Biological Process	84%
Blast2go	response to arsenic-containing substance	GO:0046685	Biological Process	84%
Blast2go	defense response to bacterium	GO:0042742	Biological Process	84%
Blast2go	cell death	GO:0008219	Biological Process	84%
Blast2go	response to cadmium ion	GO:0046686	Biological Process	84%
Blast2go	cofactor binding	GO:0048037	Molecular Function	84%
Blast2go	protein binding	GO:0005515	Molecular Function	84%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	84%
Blast2go	cadmium ion binding	GO:0046870	Molecular Function	84%
Blast2go		GO:0008415	Molecular Function	84%
Blast2go	arsenite-transmembrane transporting ATPase activity	GO:0015446	Molecular Function	84%
Blast2go	copper ion binding	GO:0005507	Molecular Function	84%
Blast2go	cinnamyl-alcohol dehydrogenase activity	GO:0045551	Molecular Function	84%
Blast2go	glutathione gamma-glutamylcysteinyltransferase activity	GO:0016756	Molecular Function	84%
Blast2go	cytosol	GO:0005829	Cellular Component	84%
Blast2go	phytochelatin transmembrane transporter activity	GO:0071992	Biological Process	84%
Blast2go	phytochelatin transmembrane transport	GO:0071994	Biological Process	84%

Source	InterPros	Term	Type	e value	Identity
Sma3	Phytochelatin synthase	IPR007719	-	0.0	-
Sma3	Phytochelatin synthase, C-terminal	IPR015407	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: Q2TSC7

Fln msg: Distance to subject end: 428 aas, your sequence is shorter than subject: 72 - 501

Fln protein: MAVAGLYRRLLPCPPAVDFSSLEGKELFHEALQNGTMEGFFKLISYFQTQSEPAYCGLASLSMVLNALAIDP

Protein Length: 73

Fln nts: GACCCGGGGTACTCTCGGAACGCATTTGACTCGGTGTATAGAATTGATTTTCATTTGCAGTGGAAGTGAAGGA_-_ATGGCGGTTGCAGGGCTCTACAGGCGCCTTCTCCCGTGCCCTCCGGCAGTGGATTTCTCCTCCCTCGAAGGCAAGGAACTTTTTCATGAGGCTCTACAAAATGGGACCATGGAGGGATTCTTTAAACTAATTTCATACTTCCAAACACAATCTGAACCTGCCTATTGCGGATTGGCTTCTCTCTCAATGGTTCTTAATGCTCTTGCAATCGATCCTGG

Fln Alignment:

biogeco3_mira_c18172___MAVAGLYRRLLPCPPAVDFSSLEGKELFHEALQNGTMEGFFKLISYFQTQSEPAYCGLASLSMVLNALAIDP
Q2TSC7__________________MAMAGLYRRLLPSPPAVDFASSQGKQLFLEAVQNGTMESFYRLVSYFQTQSEPAFCGLASLSMVLNALAIDP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain