SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene20243

Length: 117 nt

UniGene Fasta

>biog3_v1.0_unigene20243
TGGTCATATACTTTTATGTCATTTGTTTCCTCGGTTTGATTGGCATGCTTTCACTCATTTGCTCCCTGGTGCAAGGAATCTGCATTAAGTGTGTTCTATCCTAGGGAGGATATGGTG

Ace file of the UniGene biog3_v1.0_unigene20243

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8261	1/2

Source	Descriptions	Term	Type	Identity
AutoFact	putative FtsH protease [Arabidopsis thaliana]	-	-	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	84%
Blast2go	atp-dependent metalloprotease	-	-	67%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Acting on peptide bonds (peptide hydrolases), Metalloendopeptidases.	EC:3.4.24.-	-	0.0	67%

Source	GOs	Term	Type	Identity
Blast2go	cellular process	GO:0009987	Biological Process	67%
Blast2go	proteolysis	GO:0006508	Biological Process	67%
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	67%
Blast2go	ATP-dependent peptidase activity	GO:0004176	Molecular Function	67%
Blast2go	metalloendopeptidase activity	GO:0004222	Molecular Function	67%
Blast2go	ATP binding	GO:0005524	Molecular Function	67%
Blast2go	mitochondrion	GO:0005739	Cellular Component	67%
Blast2go	chloroplast	GO:0009507	Cellular Component	67%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase M41	IPR000642	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	ATPase, AAA-type, conserved site	IPR003960	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LL95

Fln msg: Overlapping hits, possible frame ERROR between 76 and 49, Distance to subject end: 199 aas, your sequence is shorter than subject: 39 - 1036

Fln protein: GHILLCHLFPRFDWHxxxxxxxxxxxSALSVFYPREDMV

Protein Length: 40

Fln nts: TGGTCATATACTTTTATGTCATTTGTTTCCTCGGTTTGATTGGCATxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTCTGCATTAAGTGTGTTCTATCCTAGGGAGGATATGGTG

Fln Alignment:

biogeco3_mira_c17901___GHILLCHLFPRFDWHAxxxxxxxxxESALSVFYPREDMV
B8LL95__________________GHILLAHLLPRFDWHAxxxxxxxxxESALSVFYPREDMV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain