SustainPineDB

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Assembly info
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene20228

Length: 380 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene20228
AGCTTGTGGAATGGCTACTGCAAAAGGTTGGAAGACATTAATCGTCCCTGGGATTCTTGCTGGAATATATGGAATATCAATTGCAACATTGCTTGCAATTGTGTTTGGAGTGGCTGTTTTGAAACATATGTGAAGTATGGGAGCAGGCAATTATTGTTTCCATATCATCTCATTTGCCATCTTTGCAATCATCTATGCGGTGGATGATTGTAAGAAATGCAGGGTTTCTTTGTACGTTGCTATGTGAGTTTATGCCACATTGCCTATTGGACTATTTCTTAGATTCAATATCACCTTGACTAAAGGTAATTCACAGGTAGAAGCTAAAAATATTACAGTTTTCATGCTTGGAAGCCATCAAGTGGTTAGAAAAATACATT

Ace file of the UniGene biog3_v1.0_unigene20228 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene38200	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF819 domain containing protein	-	-	7.00649e-43	47%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	79%
Blast2go	protein	-	-	0.0	84%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	0.0	84%

Source	InterPros	Term	Type	Identity
Sma3	Protein of unknown function DUF819	IPR008537	-	-
Sma3	FAD-binding 8	IPR013112	-	-
Sma3	Ferric reductase, NAD binding	IPR013121	-	-
Sma3	Flavoprotein transmembrane component	IPR013130	-	-
Sma3	Ferredoxin reductase-type FAD-binding domain	IPR017927	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: E0CUW7

Fln msg: your sequence is shorter than subject: 44 - 449

Fln protein: ACGMATAKGWKTLIVPGILAGIYGISIATLLAIVFGVAVLKHM*

Protein Length: 45

Fln nts: AGCTTGTGGAATGGCTACTGCAAAAGGTTGGAAGACATTAATCGTCCCTGGGATTCTTGCTGGAATATATGGAATATCAATTGCAACATTGCTTGCAATTGTGTTTGGAGTGGCTGTTTTGAAACATATGTGA___AGTATGGGAGCAGGCAATTATTGTTTCCATATCATCTCATTTGCCATCTTTGCAATCATCTATGCGGTGGATGATTGTAAGAAATGCAGGGTTTCTTTGTACGTTGCTATGTGAGTTTATGCCACATTGCCTATTGGACTATTTCTTAGATTCAATATCACCTTGACTAAAGGTAATTCACAGGTAGAAGCTAAAAATATTACAGTTTTCATGCTTGGAAGCCATCAAGTGGTTAGAAAAATACATT

Fln Alignment:

biogeco3_mira_c17879___ACGMATAKGWKTLIVPGILAGIYGISIATLLAIVFGVAVLKHM
E0CUW7__________________ACGMATAKGWSSLVVPGILAGIFGIAIATFLGIVFGVTVLKFM

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain