SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene20137

Length: 399 nt

UniGene Fasta

>biog3_v1.0_unigene20137
AATGTATGGAATCTGCAGTAGTAATTATCGATGATTCTGCAAGGGTTTGGCCTCATCATAGACATAATTTAATTTTGGTGGAAAGATACATGTATTTTCCCTGTAGTAGGCGCCAATTTGGATTGCCGGGGCTGTCACTCTTAGAAGCAGACGTTGATGAGAGGCCAGAAGATGGAACACTGGCATCTTCTTTAGCGGTGATTGAGAAAATTCACCATAATTTTTTCTCGAACACTCAGTTGCATGAAGTGGATGTCCGGGAATTTCTTGCAGCTGAACAACAAAAGATATTAAAAGATTGTAAAGTGGTTTTCAGTAGGGTTTTTCCAGTTGGAGAAGCGCAGCCACATCTTCACCCTTTGTGGCAGATGGCTGAACAATTTGGTGCAGTATGACATT

Ace file of the UniGene biog3_v1.0_unigene20137

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3664	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[K] COG5190 TFIIF-interacting CTD phosphatases, including NLI-interacting factor	-	-	2.0e-07	25%
FL-Next	sp=RNA polymerase II C-terminal domain phosphatase-like 3; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	77%
Blast2go	rna polymerase ii c-terminal domain phosphatase-like 3-like	-	-	0.0	81%

Source	GOs	Term	Type	Identity
Blast2go	negative regulation of abscisic acid mediated signaling pathway	GO:0009788	Biological Process	81%
Blast2go	trichome differentiation	GO:0010026	Biological Process	81%
Blast2go	response to jasmonic acid stimulus	GO:0009753	Biological Process	81%
Blast2go	response to salt stress	GO:0009651	Biological Process	81%
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	81%
Blast2go	response to salicylic acid stimulus	GO:0009751	Biological Process	81%
Blast2go	vegetative to reproductive phase transition of meristem	GO:0010228	Biological Process	81%
Blast2go	root hair cell differentiation	GO:0048765	Biological Process	81%
Blast2go	protein C-terminus binding	GO:0008022	Molecular Function	81%
Blast2go	DNA binding	GO:0003677	Molecular Function	81%
Blast2go	CTD phosphatase activity	GO:0008420	Molecular Function	81%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	81%
Blast2go	nucleus	GO:0005634	Cellular Component	81%

Source	InterPros	Term	Type	Identity
Sma3	Serine/threonine dehydratase, pyridoxal-phosphate-binding site	IPR000634	-	-
Sma3	BRCT domain	IPR001357	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Enolpyruvate transferase domain	IPR001986	-	-
Sma3	NLI interacting factor	IPR004274	-	-
Sma3	Inorganic pyrophosphatase	IPR008162	-	-
Sma3	FCP1-like phosphatase, phosphatase domain	IPR011947	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q8LL04

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 55 aas, your sequence is shorter than subject: 131 - 1241

Fln protein: CMESAVVIIDDSARVWPHHRHNLILVERYMYFPCSRRQFGLPGLSLLEADVDERPEDGTLASSLAVIEKIHHNFFSNTQLHEVDVREFLAAEQQKILKDCKVVFSRVFPVGEAQPHLHPLWQMAEQFGAV*

Protein Length: 132

Fln nts: AATGTATGGAATCTGCAGTAGTAATTATCGATGATTCTGCAAGGGTTTGGCCTCATCATAGACATAATTTAATTTTGGTGGAAAGATACATGTATTTTCCCTGTAGTAGGCGCCAATTTGGATTGCCGGGGCTGTCACTCTTAGAAGCAGACGTTGATGAGAGGCCAGAAGATGGAACACTGGCATCTTCTTTAGCGGTGATTGAGAAAATTCACCATAATTTTTTCTCGAACACTCAGTTGCATGAAGTGGATGTCCGGGAATTTCTTGCAGCTGAACAACAAAAGATATTAAAAGATTGTAAAGTGGTTTTCAGTAGGGTTTTTCCAGTTGGAGAAGCGCAGCCACATCTTCACCCTTTGTGGCAGATGGCTGAACAATTTGGTGCAGTATGACATT

Fln Alignment:

biogeco3_mira_c17758___MESAVVIIDDSARVWPHHRHNLILVERYMYFPCSRRQFGLPGLSLLEADVDERPEDGTLASSLAVIEKIHHNFFSNTQLHEVDVREFLAAEQQKILKDCKVVFSRVFPVGEAQPHLHPLWQMAEQFGAV
Q8LL04__________________MESSVVIIDDSVRVWPQHKMNLIAVERYLYFPCSRRQFGLLGPSLLELDRDEVPEEGTLASSLAVIEKIHQNFFSHTSLDEVDVRNILASEQRKILAGCRIVFSRIIPVGEAKPHLHPLWQTAEQFGAV

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain