SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene20042

Length: 300 nt

UniGene Fasta

>biog3_v1.0_unigene20042
AATGTGCTTCATGTTAGCACATCTCAGGTAACTGTTGGTCGAAAACCAGTGACAGGGCTTCGGTTATGCCTTGAGGGAAGGAAGCAAAACAGACTTGCAATTTATTTGCAACATTTAGTCTCTCTACCCAAAATCCTACAGCCACACTGGGATGCACATGTTGCAATTGGGCCTCCTAAGTGGCAAGGACCAGAAGAGCAAGATAGTAGATGGTTTGAACCTGTTCAATGGAAGAACTTTTCACATGTCAGCAGTGCTCCTGTAGAGAACAGTGAAACATGGATAGGGGACCTCTCTGGG

Ace file of the UniGene biog3_v1.0_unigene20042

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene28231	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	MAC/Perforin domain-containing protein [Arabidopsis thaliana] gb\|AAG51760.1\|AC068667_39 unknown protein; 124288-121737 [Arabidopsis thaliana] gb\|AAL75908.1\| At1g29690/F15D2_24 [Arabidopsis thaliana] gb\|ABO38750.1\| At1g29690 [Arabidopsis thaliana] gb\|AEE31	-	-	68%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	80%
Blast2go	protein	-	-	80%

Source	ECs	Term	Type	e value	Identity
Blast2go	Arsenite-transporting ATPase.	EC:3.6.3.16	-	0.0	80%
Blast2go	Cinnamyl-alcohol dehydrogenase.	EC:1.1.1.195	-	0.0	80%

Source	KEGGs	Term	Type	Identity
Blast2go	Phenylpropanoid biosynthesis	00940		80%
Blast2go	Biosynthesis of phenylpropanoids	01061		80%
Blast2go	Metabolic pathways	01100		80%
Blast2go	Biosynthesis of secondary metabolites	01110		80%
Blast2go	Glutathione gamma-glutamylcysteinyltransferase.	EC:2.3.2.15	-	80%

Source	GOs	Term	Type	Identity
Blast2go	arsenite transport	GO:0015700	Biological Process	80%
Blast2go	indole glucosinolate catabolic process	GO:0042344	Biological Process	80%
Blast2go	immune response	GO:0006955	Biological Process	80%
Blast2go	phytochelatin biosynthetic process	GO:0046938	Biological Process	80%
Blast2go	defense response by callose deposition in cell wall	GO:0052544	Biological Process	80%
Blast2go	lignin biosynthetic process	GO:0009809	Biological Process	80%
Blast2go	response to arsenic-containing substance	GO:0046685	Biological Process	80%
Blast2go	defense response to bacterium	GO:0042742	Biological Process	80%
Blast2go	cell death	GO:0008219	Biological Process	80%
Blast2go	response to cadmium ion	GO:0046686	Biological Process	80%
Blast2go	protein binding	GO:0005515	Molecular Function	80%
Blast2go	cadmium ion binding	GO:0046870	Molecular Function	80%
Blast2go	arsenite-transmembrane transporting ATPase activity	GO:0015446	Molecular Function	80%
Blast2go	copper ion binding	GO:0005507	Molecular Function	80%
Blast2go	cinnamyl-alcohol dehydrogenase activity	GO:0045551	Molecular Function	80%
Blast2go	glutathione gamma-glutamylcysteinyltransferase activity	GO:0016756	Molecular Function	80%
Blast2go	cytosol	GO:0005829	Cellular Component	80%
Blast2go	phytochelatin transmembrane transporter activity	GO:0071992	Biological Process	80%
Blast2go	phytochelatin transmembrane transport	GO:0071994	Biological Process	80%

Source	InterPros	Term	Type	e value	Identity
Sma3	Oligopeptide transporter	IPR000109	-	0.0	-
Sma3	Membrane attack complex component/perforin/complement C9	IPR001862	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A5C8U6

Fln msg: Distance to subject end: 119 aas, your sequence is shorter than subject: 100 - 382

Fln protein: NVLHVSTSQVTVGRKPVTGLRLCLEGRKQNRLAIYLQHLVSLPKILQPHWDAHVAIGPPKWQGPEEQDSRWFEPVQWKNFSHVSSAPVENSETWIGDLSG

Protein Length: 101

Fln nts: AATGTGCTTCATGTTAGCACATCTCAGGTAACTGTTGGTCGAAAACCAGTGACAGGGCTTCGGTTATGCCTTGAGGGAAGGAAGCAAAACAGACTTGCAATTTATTTGCAACATTTAGTCTCTCTACCCAAAATCCTACAGCCACACTGGGATGCACATGTTGCAATTGGGCCTCCTAAGTGGCAAGGACCAGAAGAGCAAGATAGTAGATGGTTTGAACCTGTTCAATGGAAGAACTTTTCACATGTCAGCAGTGCTCCTGTAGAGAACAGTGAAACATGGATAGGGGACCTCTCTGGG

Fln Alignment:

biogeco3_mira_c17620___LHVSTSQVTVGRKPVTGLRLCLEGRKQNRLAIYLQHLVSLPKILQPHWDAHVAIGPPKWQGPEEQDSRWFEPVQWKNFSHVSSAPVENSETWIGDLS
A5C8U6__________________LYVSQEQVSVGRKPVTGLRLCLEGSKQNRLSIHIQHLASLPKILQPYWDTHVAIGAPKWQGPEEQDSRWFEPVKWKNFSHVSTAPIENPETFVGDIS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain