SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene19992

Length: 193 nt

UniGene Fasta

>biog3_v1.0_unigene19992
AATGTTGTGAGGCACCACATGTGAAAGGCTTAGTGGAGTTTCATGGGGCTTTTTACACTCCTGCATCTGGACAAATCAGCATTGCTTTAGAATACATGGATGGAGGCTCACTTAGAGATCTTGTGCAATCAAAGAAGTGTATCCCTGAGCCAATTCTTTCTGTTATTACACATGAAATTTTACATGGATTAAA

Ace file of the UniGene biog3_v1.0_unigene19992

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8351	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	mitogen-activated protein kinase kinase [Suaeda salsa]	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	44%
Blast2go	mitogen-activated protein kinase kinase 6-like	-	-	73%

Source	GOs	Term	Type	Identity
Blast2go	induced systemic resistance, jasmonic acid mediated signaling pathway	GO:0009864	Biological Process	73%
Blast2go	MAPK cascade	GO:0000165	Biological Process	73%
Blast2go	induced systemic resistance, ethylene mediated signaling pathway	GO:0009866	Biological Process	73%
Blast2go	phosphorylation	GO:0016310	Biological Process	73%
Blast2go	defense response, incompatible interaction	GO:0009814	Biological Process	73%
Blast2go	MAP kinase kinase activity	GO:0004708	Molecular Function	73%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	73%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Nuclear transport factor 2	IPR002075	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Nuclear transport factor 2, Eukaryote	IPR018222	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5A9P4

Fln msg: Distance to subject end: 171 aas, your sequence is shorter than subject: 63 - 349

Fln protein: CCEAPHVKGLVEFHGAFYTPASGQISIALEYMDGGSLRDLVQSKKCIPEPILSVITHEILHGL

Protein Length: 64

Fln nts: AATGTTGTGAGGCACCACATGTGAAAGGCTTAGTGGAGTTTCATGGGGCTTTTTACACTCCTGCATCTGGACAAATCAGCATTGCTTTAGAATACATGGATGGAGGCTCACTTAGAGATCTTGTGCAATCAAAGAAGTGTATCCCTGAGCCAATTCTTTCTGTTATTACACATGAAATTTTACATGGATTAAA

Fln Alignment:

biogeco3_mira_c17551___EAPHVKGLVEFHGAFYTPASGQISIALEYMDGGSLRDLVQSKKCIPEPILSVITHEILHGL
D5A9P4__________________QASQCPNVVVCYHAFYN--NGVISIVLEYMDCGSLADVIKRVKTFTEPYLAVICKQVLKGL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain