SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene19887

Length: 237 nt

UniGene Fasta

>biog3_v1.0_unigene19887
AATGTCTCAGAGGGGATGTGTACAGCTTTGGGGTTGTAATTCTGGAGCTGCTCACTGGAAAGAGGCCTATTGATATCTGCAAACCAAAGGGATGCAGGGACTTGGTGTCATGGGTGCAACAAATGAGATCTGAAGGTAAAGAGGAGGAAATCTTTGATCCCTCACTTAAAGGCAAAGGTTATGAGGAGGAGATGTCACGGGTACTCGATGTTGGATGCATATGCACAAATCAACATT

Ace file of the UniGene biog3_v1.0_unigene19887

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17485	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Tyrosine-sulfated glycopeptide receptor 1 [Arabidopsis thaliana] sp\|Q9C7S5.1\|PSYR1_ARATH RecName: Full=Tyrosine-sulfated glycopeptide receptor 1 gb\|AAG51803.1\|AC067754_19 leucine-rich receptor-like protein kinase, putative; 84911-81624 [Arabidopsis thalia	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	43%
Blast2go	phytosulfokine receptor	-	-	87%

Source	InterPros	Term	Type	Identity
Sma3	IQ motif, EF-hand binding site	IPR000048	-	-
Sma3	Intradiol ring-cleavage dioxygenase, C-terminal	IPR000627	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Myosin head, motor domain	IPR001609	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Enolpyruvate transferase domain	IPR001986	-	-
Sma3	Dilute	IPR002710	-	-
Sma3	Pistil-specific extensin-like protein	IPR003882	-	-
Sma3	Myosin, N-terminal, SH3-like	IPR004009	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat 2	IPR013101	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	SKG6/AXL2 alpha-helix transmembrane domain	IPR014805	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Homeobox, conserved site	IPR017970	-	-
Sma3	Interleukin-4/interleukin-13, conserved site	IPR018096	-	-
Sma3	Dil domain	IPR018444	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKU4

Fln msg: Distance to subject end: 31 aas, your sequence is shorter than subject: 78 - 366

Fln protein: CLRGDVYSFGVVILELLTGKRPIDICKPKGCRDLVSWVQQMRSEGKEEEIFDPSLKGKGYEEEMSRVLDVGCICTNQH

Protein Length: 79

Fln nts: AATGTCTCAGAGGGGATGTGTACAGCTTTGGGGTTGTAATTCTGGAGCTGCTCACTGGAAAGAGGCCTATTGATATCTGCAAACCAAAGGGATGCAGGGACTTGGTGTCATGGGTGCAACAAATGAGATCTGAAGGTAAAGAGGAGGAAATCTTTGATCCCTCACTTAAAGGCAAAGGTTATGAGGAGGAGATGTCACGGGTACTCGATGTTGGATGCATATGCACAAATCAACATT

Fln Alignment:

biogeco3_mira_c17400___RGDVYSFGVVILELLTGKRPIDICKPKGCRDLVSWVQQMRSEGKEEEIFDPSLKGKGYEEEMSRVLDVGCIC
B8LKU4__________________KSDVYSFGVVLLELLTGRKPVDHTMPRGQQSLVTWATPRLSEDKVKQCVDPKLKGEYPPKAVAKLAAVAALC

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain