SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene19696

Length: 269 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene19696
AGAGTTTGTAGATGGAGCACTGGGTCATATTCTTAATATTTCCAAAGCATTGGGAGATCTGATTGGAGAAGTCACACCTGTATGGCCTCATGTAATCCATGGCCACTATGCAGATGCAGGGGATGCTGCTTGCCTTCTTTCTGGTGCTCTGAACGTTCCAATGGTTTTGACAGGCCATTCTCTAGGCCGAAATAAACTAGAACAATTATTGAAACAAGGATTGCATTCCAAGGAAGATATCAATGCAACATACAAGATCATGCGACATT

Ace file of the UniGene biog3_v1.0_unigene19696 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4127	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Predicted protein n=3 Tax=Physcomitrella patens subsp. patens RepID=A9SCX9_PHYPA	-	-	58%
FL-Next	sp=Sucrose-phosphate synthase 2; Craterostigma plantagineum.	-	-	81%
Blast2go	sucrose-phosphate synthase	-	-	72%

Source	ECs	Term	Type	e value	Identity
Blast2go	Sucrose-phosphate synthase.	EC:2.4.1.14	-	0.0	72%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Starch and sucrose metabolism	00500		0.0	72%
Blast2go	Metabolic pathways	01100		0.0	72%

Source	GOs	Term	Type	e value	Identity
Blast2go	metabolic process	GO:0008152	Biological Process	0.0	72%
Blast2go	sucrose-phosphate synthase activity	GO:0046524	Molecular Function	0.0	72%

Source	InterPros	Term	Type	Identity
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Glycosyl transferase, family 1	IPR001296	-	-
Sma3	Homeodomain	IPR001356	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Leucine-rich repeat, typical subtype	IPR003591	-	-
Sma3	Sucrose-phosphate synthase	IPR006380	-	-
Sma3		IPR012287	-	-
Sma3	Sucrose phosphate synthase, plant	IPR012819	-	-
Sma3	Homeobox, conserved site	IPR017970	-	-
Sma3	L-lactate dehydrogenase, active site	IPR018177	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: O04933

Fln msg: Distance to subject end: 696 aas, your sequence is shorter than subject: 89 - 1081

Fln protein: EFVDGALGHILNISKALGDLIGEVTPVWPHVIHGHYADAGDAACLLSGALNVPMVLTGHSLGRNKLEQLLKQGLHSKEDINATYKIMRH

Protein Length: 90

Fln nts: AGAGTTTGTAGATGGAGCACTGGGTCATATTCTTAATATTTCCAAAGCATTGGGAGATCTGATTGGAGAAGTCACACCTGTATGGCCTCATGTAATCCATGGCCACTATGCAGATGCAGGGGATGCTGCTTGCCTTCTTTCTGGTGCTCTGAACGTTCCAATGGTTTTGACAGGCCATTCTCTAGGCCGAAATAAACTAGAACAATTATTGAAACAAGGATTGCATTCCAAGGAAGATATCAATGCAACATACAAGATCATGCGACATT

Fln Alignment:

biogeco3_mira_c17118___EFVDGALGHILNISKALGDLIGEVTPVWPHVIHGHYADAGDAACLLSGALNVPMVLTGHSLGRNKLEQLLKQGLHSKEDINATYKIMR
O04933__________________EFVDGALSHIVNMSKALGDQIGGGQPVWPYVIHGHYADAGDSAALLSGALNVPMVLTGHSLGRNKLEQLLKQGRQTKEDINSMYRIMR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain