SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
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miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene19684

Length: 147 nt

UniGene Fasta

>biog3_v1.0_unigene19684
GCAGCAGCAGCGGATCTTGAATTGGAGGAAGTCTCATTCCTGAAGGAGCAGATTGCTTCATACTTTACAGATAAGCTTCTGAGGGTTGTTCGTGATATACTGCGTCATATTACTGCTAAAGGAAGAAAAGAGGATGCTTCTGACATT

Ace file of the UniGene biog3_v1.0_unigene19684

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9181	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	DNA polymerase n=1 Tax=Physcomitrella patens subsp. patens RepID=A9SXI7_PHYPA	-	-	63%
FL-Next	sp=DNA polymerase; Physcomitrella patens subsp. patens (Moss).	-	-	67%
Blast2go	dna polymerase epsilon catalytic subunit a	-	-	76%

Source	ECs	Term	Type	e value	Identity
Blast2go	DNA-directed DNA polymerase.	EC:2.7.7.7	-	0.0	76%

Source	KEGGs	Term	Identity
Blast2go	Purine metabolism	00230	76%
Blast2go	Pyrimidine metabolism	00240	76%
Blast2go	Metabolic pathways	01100	76%

Source	GOs	Term	Type	Identity
Blast2go	negative regulation of long-day photoperiodism, flowering	GO:0048579	Biological Process	76%
Blast2go	DNA replication	GO:0006260	Biological Process	76%
Blast2go	positive regulation of S phase of mitotic cell cycle	GO:0045750	Biological Process	76%
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	76%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	76%
Blast2go	DNA-directed DNA polymerase activity	GO:0003887	Molecular Function	76%
Blast2go	DNA binding	GO:0003677	Molecular Function	76%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	76%
Blast2go	epsilon DNA polymerase complex	GO:0008622	Cellular Component	76%
Blast2go	apoplast	GO:0048046	Cellular Component	76%

Source	InterPros	Term	Type	Identity
Sma3	RNA polymerase sigma-70 factor	IPR000943	-	-
Sma3	Aminotransferase, class-II, pyridoxal-phosphate binding site	IPR001917	-	-
Sma3	DNA-directed DNA polymerase, family B, exonuclease domain	IPR006133	-	-
Sma3	DNA-directed DNA polymerase, family B, multifunctional domain	IPR006134	-	-
Sma3	DNA-directed DNA polymerase, family B	IPR006172	-	-
Sma3	DNA polymerase epsilon, catalytic subunit A, C-terminal	IPR013697	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A9SXI7

Fln msg: Distance to subject end: 201 aas, your sequence is shorter than subject: 49 - 2233

Fln protein: AAAADLELEEVSFLKEQIASYFTDKLLRVVRDILRHITAKGRKEDASDI

Protein Length: 50

Fln nts: GCAGCAGCAGCGGATCTTGAATTGGAGGAAGTCTCATTCCTGAAGGAGCAGATTGCTTCATACTTTACAGATAAGCTTCTGAGGGTTGTTCGTGATATACTGCGTCATATTACTGCTAAAGGAAGAAAAGAGGATGCTTCTGACATT

Fln Alignment:

biogeco3_mira_c17105___AAAADLELEEVSFLKEQIASYFTDKLLRVVRDILRHITAKGRKEDA
A9SXI7__________________STASDAEAQEVSYLKEQIASYFTDKLLRVVRDVQRHINARRDEEDS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain