SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene19526

Length: 256 nt

UniGene Fasta

>biog3_v1.0_unigene19526
AATGTAACCCTAGTGTTCCATTATACGAATTTAATGGTCATAGAAAAACAGTTTCCTATGTTAAATTCATTTCAACAAATGAACTAGCTTCTGCATCTACAGACAGTACACTGCGCTTGTGGGATGTGAGGGATAATTGCCTTGTACGGACATTTAAGGGGCACACTAATGAGAAGAACTTTGTGGGGCTTACAGTCAACTCTGAATACATAGCTTGTGGCAGTGAAACAAATGGGGTGTTTGTGTATCACAAGGC

Ace file of the UniGene biog3_v1.0_unigene19526

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2010	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[R] COG2319 FOG: WD40 repeat	-	-	2.0e-10	27%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	59%
Blast2go	protein	-	-	0.0	89%

Source	GOs	Term	Type	e value	Identity
Blast2go	zinc ion binding	GO:0008270	Molecular Function	0.0	89%

Source	InterPros	Term	Type	Identity
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	KDPG/KHG aldolase	IPR000887	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	Signal transduction response regulator, receiver domain	IPR001789	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3		IPR015706	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5ADQ7

Fln msg: Distance to subject end: 56 aas, your sequence is shorter than subject: 84 - 347

Fln protein: CNPSVPLYEFNGHRKTVSYVKFISTNELASASTDSTLRLWDVRDNCLVRTFKGHTNEKNFVGLTVNSEYIACGSETNGVFVYHK

Protein Length: 85

Fln nts: AATGTAACCCTAGTGTTCCATTATACGAATTTAATGGTCATAGAAAAACAGTTTCCTATGTTAAATTCATTTCAACAAATGAACTAGCTTCTGCATCTACAGACAGTACACTGCGCTTGTGGGATGTGAGGGATAATTGCCTTGTACGGACATTTAAGGGGCACACTAATGAGAAGAACTTTGTGGGGCTTACAGTCAACTCTGAATACATAGCTTGTGGCAGTGAAACAAATGGGGTGTTTGTGTATCACAAGGC

Fln Alignment:

biogeco3_mira_c16894___NPSVPLYEFNGHRKTVSYVKFISTNELASASTDSTLRLWDVRDNC------LVRTFKGHTNEKNFVGLTVNSEYIACGSETNGVFVYHK
D5ADQ7__________________NIKTPWYILASHSKTVSYVKFLDSASLVSASTDNTLKLWDLATNKGRILKNPVRTFTGHTNVKNFVGLSVADGYIATGSETNEVFVYHK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain