SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene19243

Length: 199 nt

UniGene Fasta

>biog3_v1.0_unigene19243
ACCTACGCCAGTTGCAACCATAGATATGCTGCCATCTGTTGCCTATACAGACAATCCGTCAACAAGCTTTGCAACCAAATTTGTGCATGCATCTACAAATAAAAATCGTTGCTCTATCAACAGAGTTGTATGGTACGCCAACGGGTAGACGAAACCTTATAACAGGATCACAGAGTGGGGAGTTTACACTTTGGACATT

Ace file of the UniGene biog3_v1.0_unigene19243

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10001	1/2

Source	Descriptions	Term	Type	Identity
AutoFact	[R] COG2319 FOG: WD40 repeat	-	-	43%
FL-Next	sp=Flowering time control protein FY; Arabidopsis thaliana (Mouse-ear cress).	-	-	77%
Blast2go	flowering time control protein fy	-	-	81%

Source	ECs	Term	Type	e value	Identity
Blast2go	Histone acetyltransferase.	EC:2.3.1.48	-	0.0	81%

Source	GOs	Term	Type	Identity
Blast2go	regulation of flower development	GO:0009909	Biological Process	81%
Blast2go	histone acetylation	GO:0016573	Biological Process	81%
Blast2go	mRNA processing	GO:0006397	Biological Process	81%
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	81%
Blast2go	protein binding	GO:0005515	Molecular Function	81%
Blast2go	histone acetyltransferase activity	GO:0004402	Molecular Function	81%
Blast2go	CUL4 RING ubiquitin ligase complex	GO:0080008	Cellular Component	81%

Source	InterPros	Term	Type	Identity
Sma3	WD40 repeat	IPR001680	-	-
Sma3	Aldose 1-/Glucose-6-phosphate 1-epimerase	IPR008183	-	-
Sma3	Glycoside hydrolase-type carbohydrate-binding, subgroup	IPR014718	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q6NLV4

Fln msg: Overlapping hits, possible frame ERROR between 145 and 135, Distance to subject end: 495 aas, your sequence is shorter than subject: 66 - 647

Fln protein: PTPVATIDMLPSVAYTDNPSTSFATKFVHASTNKNRCSINRVVWxxxxxRRNLITGSQSGEFTLWT

Protein Length: 67

Fln nts: ACCTACGCCAGTTGCAACCATAGATATGCTGCCATCTGTTGCCTATACAGACAATCCGTCAACAAGCTTTGCAACCAAATTTGTGCATGCATCTACAAATAAAAATCGTTGCTCTATCAACAGAGTTGTATGGxxxxxxxxxxxxxxxAGACGAAACCTTATAACAGGATCACAGAGTGGGGAGTTTACACTTTGGACATT

Fln Alignment:

biogeco3_mira_c16514___PTPVATIDMLPSVAYTDNPSTSFATKFVHASTNKNRCSINRVVWxxxxRRNLITGSQSGEFTLW
Q6NLV4__________________PTPAAAVDMLPTVAYSDNPSTSFAAKFVHASLNKNRCSINRVLWxxxxRR-LITGSQSGEFTLW

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain