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UniGene Name: biog3_v1.0_unigene18837
Length: 163 nt
 UniGene Fasta
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| >biog3_v1.0_unigene18837
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Ace file of the UniGene biog3_v1.0_unigene18837
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If you push the Download ace button, you will download an ace file of this UniGene.
To watch this ACE file you will need an ACE viewer program as Tablet:
Go to the Tablet ACE viewer Web
| Annotations |
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| Parent Assembly | Parent UniGene | Reads (related/total) |
|---|---|---|
| SustainPine v2.0 | sp_v2.0_unigene7032 | 1/2 |
| Source | Descriptions | Term | Type | e value | Identity |
|---|---|---|---|---|---|
| AutoFact | methyltransferase-like protein 1 [Arabidopsis thaliana] emb|CAB39622.1| putative protein [Arabidopsis thaliana] emb|CAB78121.1| putative protein [Arabidopsis thaliana] gb|AEE82823.1| methyltransferase-like protein 1 [Arabidopsis thaliana] | - | - | 0.0 | 53% |
| Blast2go | methyltransferase-like protein 1-like | - | - | 0.0 | 65% |
| Source | ECs | Term | Type | e value | Identity |
|---|---|---|---|---|---|
| Blast2go | Transferases, Transferring one-carbon groups, Methyltransferases. | EC:2.1.1.- | - | 0.0 | 65% |
| Source | GOs | Term | Type | e value | Identity |
|---|---|---|---|---|---|
| Blast2go | nucleobase-containing compound metabolic process | GO:0006139 | Biological Process | 0.0 | 65% |
| Blast2go | methylation | GO:0032259 | Biological Process | 0.0 | 65% |
| Blast2go | nucleic acid binding | GO:0003676 | Molecular Function | 0.0 | 65% |
| Blast2go | methyltransferase activity | GO:0008168 | Molecular Function | 0.0 | 65% |
| Source | InterPros | Term | Type | e value | Identity |
|---|---|---|---|---|---|
| Sma3 | Regulator of chromosome condensation, RCC1 | IPR000408 | - | 0.0 | - |
| Sma3 | ArgE/DapE/ACY1/CPG2/YscS, conserved site | IPR001261 | - | 0.0 | - |
| Sma3 | DNA methylase, N-6 adenine-specific, conserved site | IPR002052 | - | 0.0 | - |
| Sma3 | MT-A70 | IPR007757 | - | 0.0 | - |
| Full-Lengther Next Prediction |
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Fln status: unknown
Fln database: testcode
Fln msg: Sequence length < 200 nt
Test code: 0
Test Code was used to find complete genes when there was not found a reliable orthologue. The best ORF (Open Reading Frame) is shown, and only ORFs > 200pb were analyzed. Your ORF will be more reliable if a stop codon was found before the start codon. A Test Code value > 0.95 means the ORF is probably coding. A Test Code value < 0.74 means the ORF is probably non-coding. Test Code values in between 0.74 and 0.95 mean it is uncertain whether the ORF is coding or not.
| SSRs (tot: 1) |
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| Start position | End position | Sequence | Length |
|---|---|---|---|
| 24 | 35 | CAG CAG CAG CAG | 12 |
Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain
