SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene18477

Length: 236 nt

UniGene Fasta

>biog3_v1.0_unigene18477
ATTCAAGGTCTATGCTGCTGCAGGAACTGTGAAAAAGAACTATGTGAATATATTGTTGATGCTGTTACGTCTTCGTCAAGCATGTGATCATCCTCTTCTTGCTAAAAGTTGCTTATCCATTTCTAATTGGAGATCTTCTGCAGAAGCAGCAAGGAAGCTACCCAGGGAAAAACAGATTGATTTGATAAATCGTTTGGAAGGTTCACTGGCTCTTTGTGGCCTCTGTAATGAACATT

Ace file of the UniGene biog3_v1.0_unigene18477

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4164	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam00271, Helicase_C, Helicase conserved C-terminal domain	-	-	6.0e-16	33%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	76%
Blast2go	helicase and zinc finger domain-containing protein	-	-	0.0	72%

Source	GOs	Term	Type	Identity
Blast2go	embryo sac development	GO:0009553	Biological Process	72%
Blast2go	ATP binding	GO:0005524	Molecular Function	72%
Blast2go	helicase activity	GO:0004386	Molecular Function	72%
Blast2go	DNA binding	GO:0003677	Molecular Function	72%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	72%

Source	InterPros	Term	Type	Identity
Sma3	SWAP/Surp	IPR000061	-	-
Sma3	SNF2-related	IPR000330	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3		IPR014021	-	-
Sma3	HIP116, Rad5p N-terminal	IPR014905	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: F6GZ87

Fln msg: Distance to subject end: 308 aas, your sequence is shorter than subject: 78 - 1397

Fln protein: FKVYAAAGTVKKNYVNILLMLLRLRQACDHPLLAKSCLSISNWRSSAEAARKLPREKQIDLINRLEGSLALCGLCNEH

Protein Length: 79

Fln nts: ATTCAAGGTCTATGCTGCTGCAGGAACTGTGAAAAAGAACTATGTGAATATATTGTTGATGCTGTTACGTCTTCGTCAAGCATGTGATCATCCTCTTCTTGCTAAAAGTTGCTTATCCATTTCTAATTGGAGATCTTCTGCAGAAGCAGCAAGGAAGCTACCCAGGGAAAAACAGATTGATTTGATAAATCGTTTGGAAGGTTCACTGGCTCTTTGTGGCCTCTGTAATGAACATT

Fln Alignment:

biogeco3_mira_c15470___FKVYAAAGTVKKNYVNILLMLLRLRQACDHPLLAKSCLSISNWRSSAEAARKLPREKQIDLINRLEGSLALCGLCNE
F6GZ87__________________FEVYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGYNSNSVWRSSVEMAKKLSREKQIYLLNCLEGSLAICGICND

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain