SustainPineDB

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Assembly info
Unigenes
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SSRs
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ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene18408

Length: 250 nt

UniGene Fasta

>biog3_v1.0_unigene18408
AATGTCTATCTTACTTCTTCTGTATATAGGCCTGTTCTTCAGTTTACTGATAAAGTTGTATCTCTTCTACCTCCAAAGTATGCTCAACTTGGGAATGATGGACTTCAAGCTTTCATCGAGAATTTTGTCAAAGATCATTTCCTTCCGGCAATGTTTGTGGATTACCGGAAGTGTGTGCAGCAAGCAATAGCAAGTCCTGCTGCTTTTAGGCCACGAGCTCATGCTGGTGCAGTATATGACCCGTCAGTTG

Ace file of the UniGene biog3_v1.0_unigene18408

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene34955	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	exocyst complex component 4 [Arabidopsis thaliana] sp\|Q93YU5.1\|EXOC4_ARATH RecName: Full=Probable exocyst complex component 4; AltName: Full=Exocyst complex component Sec8; Short=AtSEC8 gb\|AAL24111.1\| unknown protein [Arabidopsis thaliana] dbj\|BAC43144.1\|	-	-	1.0e-29	73%
FL-Next	sp=Probable exocyst complex component 4; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	73%
Blast2go	protein	-	-	2.30657e-37	84%

Source	GOs	Term	Type	e value	Identity
Blast2go	pollen tube growth	GO:0009860	Biological Process	2.30657e-37	84%
Blast2go	pollen germination	GO:0009846	Biological Process	2.30657e-37	84%
Blast2go	mucilage biosynthetic process involved in seed coat development	GO:0048354	Biological Process	2.30657e-37	84%
Blast2go	cytosol	GO:0005829	Cellular Component	2.30657e-37	84%
Blast2go	exocyst	GO:0000145	Cellular Component	2.30657e-37	84%
Blast2go	plasma membrane	GO:0005886	Cellular Component	2.30657e-37	84%

Source	InterPros	Term	Type	e value	Identity
Sma3	Sec8 exocyst complex component specific domain	IPR007191	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q93YU5

Fln msg: Distance to subject end: 363 aas, your sequence is shorter than subject: 83 - 1053

Fln protein: NVYLTSSVYRPVLQFTDKVVSLLPPKYAQLGNDGLQAFIENFVKDHFLPAMFVDYRKCVQQAIASPAAFRPRAHAGAVYDPSV

Protein Length: 84

Fln nts: AATGTCTATCTTACTTCTTCTGTATATAGGCCTGTTCTTCAGTTTACTGATAAAGTTGTATCTCTTCTACCTCCAAAGTATGCTCAACTTGGGAATGATGGACTTCAAGCTTTCATCGAGAATTTTGTCAAAGATCATTTCCTTCCGGCAATGTTTGTGGATTACCGGAAGTGTGTGCAGCAAGCAATAGCAAGTCCTGCTGCTTTTAGGCCACGAGCTCATGCTGGTGCAGTATATGACCCGTCAGTTG

Fln Alignment:

biogeco3_mira_c15378___VYLTSSVYRPVLQFTDKVVSLLPPKYAQLGNDGLQAFIENFVKDHFLPAMFVDYRKCVQQAIASPAAFRPRAH
Q93YU5__________________IYLAASIYRPVLQFTDKITSMLPKKHSQLVNDGLLTFTENFVKDHLLPTMFVDYRKGVQQAISSAAAFRPRAH

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain