SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
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miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene18296

Length: 140 nt

UniGene Fasta

>biog3_v1.0_unigene18296
AATGTTCTCCCTTCTGGTCCTCACCATAGCTAGCTGTTTCTTTGTAGAGTTAAAATATGCAAAACCATCCAGTACAGAAGTTATGAAGGGACTGTTCATTCCAAGATTGGGTGGTCATGGAGCAACTGGGATAGCGATTT

Ace file of the UniGene biog3_v1.0_unigene18296

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7241	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Metal transporter Nramp3 n=3 Tax=Poaceae RepID=NRAM3_ORYSJ	-	-	62%
FL-Next	sp=Metal transporter Nramp6; Arabidopsis thaliana (Mouse-ear cress).	-	-	60%
Blast2go	metal transporter nramp6	-	-	82%

Source	GOs	Term	Type	Identity
Blast2go	manganese ion homeostasis	GO:0055071	Biological Process	82%
Blast2go	cadmium ion transmembrane transport	GO:0070574	Biological Process	82%
Blast2go	lead ion transport	GO:0015692	Biological Process	82%
Blast2go	iron ion transmembrane transport	GO:0034755	Biological Process	82%
Blast2go	manganese ion transmembrane transport	GO:0071421	Biological Process	82%
Blast2go	cellular metal ion homeostasis	GO:0006875	Biological Process	82%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	82%
Blast2go	electron carrier activity	GO:0009055	Molecular Function	82%
Blast2go	monooxygenase activity	GO:0004497	Molecular Function	82%
Blast2go	iron ion transmembrane transporter activity	GO:0005381	Molecular Function	82%
Blast2go	heme binding	GO:0020037	Molecular Function	82%
Blast2go	cadmium ion transmembrane transporter activity	GO:0015086	Molecular Function	82%
Blast2go	manganese ion transmembrane transporter activity	GO:0005384	Molecular Function	82%
Blast2go	inorganic anion transmembrane transporter activity	GO:0015103	Molecular Function	82%
Blast2go	plasma membrane	GO:0005886	Cellular Component	82%

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Natural resistance-associated macrophage protein	IPR001046	-	-
Sma3	Nuclear transport factor 2	IPR002075	-	-
Sma3	K Homology domain	IPR004087	-	-
Sma3	K Homology domain, type 1	IPR004088	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3		IPR018111	-	-
Sma3	Nuclear transport factor 2, Eukaryote	IPR018222	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9S9N8

Fln msg: Distance to subject end: 306 aas, your sequence is shorter than subject: 46 - 527

Fln protein: MFSLLVLTIASCFFVELKYAKPSSTEVMKGLFIPRLGGHGATGIAI

Protein Length: 47

Fln nts: AATGTTCTCCCTTCTGGTCCTCACCATAGCTAGCTGTTTCTTTGTAGAGTTAAAATATGCAAAACCATCCAGTACAGAAGTTATGAAGGGACTGTTCATTCCAAGATTGGGTGGTCATGGAGCAACTGGGATAGCGATTT

Fln Alignment:

biogeco3_mira_c15219___MFSLLVLTIASCFFVELKYAKPSSTEVMKGLFIPRLGGHGATGIAI
Q9S9N8__________________LIAFLVFTIALCFFVELHYSKPDPKEVLYGLFVPQLKGNGATGLAI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain