SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene18243

Length: 223 nt

UniGene Fasta

>biog3_v1.0_unigene18243
AATGTATAGATATCAATTACTTTCCTGGCTATGCTAAGATGCCAGCTTATGAATCGGTGCTGACTGATTTTCTGTAAGATTTTGATGAGAAGAAGTCATTGGAGGGTGGTGCAGTTACTGATGCTAAGTTGGATGAGAAGATTAATGCTACCAGAAAGCAAGATGGTGTTTATGAGGGTATCGCTGAGTGCTGTAATGTGGATGAGAAGATTGAAGCTACCAG

Ace file of the UniGene biog3_v1.0_unigene18243

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene633	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	inositol phosphate kinase [Glycine max]	-	-	65%
FL-Next	sp=Inositol-tetrakisphosphate 1-kinase 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	70%
Blast2go	inositol phosphate kinase	-	-	78%

Source	ECs	Term	Type	e value	Identity
Blast2go	Inositol-tetrakisphosphate 1-kinase.	EC:2.7.1.134	-	0.0	78%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Inositol phosphate metabolism	00562		0.0	78%
Blast2go	Inositol-1,3,4-trisphosphate 5/6-kinase.	EC:2.7.1.159	-	0.0	78%

Source	KEGGs	Term	Identity
Blast2go	Inositol phosphate metabolism	00562	78%
Blast2go	Metabolic pathways	01100	78%
Blast2go	Phosphatidylinositol signaling system	04070	78%

Source	GOs	Term	Type	Identity
Blast2go	phosphorylation	GO:0016310	Biological Process	78%
Blast2go	inositol trisphosphate metabolic process	GO:0032957	Biological Process	78%
Blast2go	inositol tetrakisphosphate 1-kinase activity	GO:0047325	Molecular Function	78%
Blast2go	ATP binding	GO:0005524	Molecular Function	78%
Blast2go	magnesium ion binding	GO:0000287	Molecular Function	78%
Blast2go	inositol-1,3,4-trisphosphate 5/6-kinase activity	GO:0035300	Molecular Function	78%
Blast2go	mitochondrion	GO:0005739	Cellular Component	78%

Source	InterPros	Term	Type	Identity
Sma3	Inositol-tetrakisphosphate 1-kinase	IPR008656	-	-
Sma3	ATP-grasp fold	IPR011761	-	-
Sma3	Inositol-tetrakisphosphate 1-kinase, plant	IPR017427	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q9SBA5

Fln msg: your sequence is shorter than subject: 25 - 319

Fln protein: CIDINYFPGYAKMPAYESVLTDFL*

Protein Length: 26

Fln nts: AATGTATAGATATCAATTACTTTCCTGGCTATGCTAAGATGCCAGCTTATGAATCGGTGCTGACTGATTTTCTGTAA___GATTTTGATGAGAAGAAGTCATTGGAGGGTGGTGCAGTTACTGATGCTAAGTTGGATGAGAAGATTAATGCTACCAGAAAGCAAGATGGTGTTTATGAGGGTATCGCTGAGTGCTGTAATGTGGATGAGAAGATTGAAGCTACCAG

Fln Alignment:

biogeco3_mira_c15155___IDINYFPGYAKMPAYESVLTDFL*DFDEKKS
Q9SBA5__________________IDINYFPGYAKMPSYEPVLTEFFWDMVTKKN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain