SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene18226

Length: 216 nt

UniGene Fasta

>biog3_v1.0_unigene18226
AATGTCACCCTATATTAGCTTTAAATATGGCAGTTATCTCAATAGGCGTGAAAGAAGGACTCTATTGGGTGACAAAAAAGGCAGGAGAGAGGGAAGGGAGTGGGCTTCTTCAAGCGAATGCTTGGCATCATCGTGCTGATGCTGTTTCTTCAGTAATTGCTCTGATTGGTGTCGGAGGTGCAATCCTAGGTTTGCCTATTTTAGATCCTCTAGCTG

Ace file of the UniGene biog3_v1.0_unigene18226

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2996	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Metal tolerance protein (Fragment) n=1 Tax=Populus trichocarpa RepID=B9IBH9_POPTR	-	-	59%
FL-Next	sp=Metal tolerance protein 2; Oryza sativa subsp. japonica (Rice).	-	-	72%
Blast2go	metal tolerance protein c1	-	-	80%

Source	GOs	Term	Type	Identity
Blast2go	cation transport	GO:0006812	Biological Process	80%
Blast2go	transmembrane transport	GO:0055085	Biological Process	80%
Blast2go	efflux transmembrane transporter activity	GO:0015562	Molecular Function	80%
Blast2go	cation transmembrane transporter activity	GO:0008324	Molecular Function	80%
Blast2go	membrane	GO:0016020	Cellular Component	80%
Blast2go	mitochondrion	GO:0005739	Cellular Component	80%

Source	InterPros	Term	Type	e value	Identity
Sma3	Cation efflux protein	IPR002524	-	0.0	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q10LJ2

Fln msg: Distance to subject end: 114 aas, your sequence is shorter than subject: 71 - 389

Fln protein: CHPILALNMAVISIGVKEGLYWVTKKAGEREGSGLLQANAWHHRADAVSSVIALIGVGGAILGLPILDPLA

Protein Length: 72

Fln nts: AATGTCACCCTATATTAGCTTTAAATATGGCAGTTATCTCAATAGGCGTGAAAGAAGGACTCTATTGGGTGACAAAAAAGGCAGGAGAGAGGGAAGGGAGTGGGCTTCTTCAAGCGAATGCTTGGCATCATCGTGCTGATGCTGTTTCTTCAGTAATTGCTCTGATTGGTGTCGGAGGTGCAATCCTAGGTTTGCCTATTTTAGATCCTCTAGCTG

Fln Alignment:

biogeco3_mira_c15130___HPILALNMAVISIGVKEGLYWVTKKAGEREGSGLLQANAWHHRADAVSSXXXXXXXXXXXXXXXXXDPLA
Q10LJ2__________________HPILALSVTAFAISVKEGLYWITKRAGEKEGSGLMKANAWHHRSDAISSVVALLGVGGSILGVPYLDPLA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain