SustainPineDB

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Assembly info
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene18190

Length: 229 nt

UniGene Fasta

>biog3_v1.0_unigene18190
AATGTCGAATCATACAGTGGTTCAGACTTCCAACCAGACCATATACACGACCTGCGACGTCAATGACGATTCGGACGACCTCATCGAGTGGTCCAGTTCGGATCCGTCGGCCAACGCGCAGCCGACGACGGTGTCGGTACCCCTGGTGAAGGAGGGCATCAACTATTTCTTTTCCAACTATTATGACGGATGGCAATGCGCCAAAGGAGGCCAGAAGTTCCAGATCAAC

Ace file of the UniGene biog3_v1.0_unigene18190

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15717	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cu_bind_like domain containing protein	-	-	3.0e-13	29%
FL-Next	tr=Putative uncharacterized protein; Glycine max (Soybean) (Glycine hispida).	-	-	0.0	58%
Blast2go	copper ion binding	-	-	0.0	70%

Source	InterPros	Term	Type	e value	Identity
Sma3	Plastocyanin-like	IPR003245	-	0.0	-
Sma3	Cupredoxin	IPR008972	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: C6T2V7

Fln msg: Distance to subject end: 84 aas, your sequence is shorter than subject: 76 - 237

Fln protein: MSNHTVVQTSNQTIYTTCDVNDDSDDLIEWSSSDPSANAQPTTVSVPLVKEGINYFFSNYYDGWQCAKGGQKFQIN

Protein Length: 77

Fln nts: AATGTCGAATCATACAGTGGTTCAGACTTCCAACCAGACCATATACACGACCTGCGACGTCAATGACGATTCGGACGACCTCATCGAGTGGTCCAGTTCGGATCCGTCGGCCAACGCGCAGCCGACGACGGTGTCGGTACCCCTGGTGAAGGAGGGCATCAACTATTTCTTTTCCAACTATTATGACGGATGGCAATGCGCCAAAGGAGGCCAGAAGTTCCAGATCAAC

Fln Alignment:

biogeco3_mira_c15078___SNHTVVQTSNQTIYTTCDVNDDSD-DLIEWSSSDPS-ANAQPTTVSVPLVKEGINYFFSNYYDGWQCAKGGQKFQIN
C6T2V7__________________TNHSVVQTYNFTTYKECDYDDAQDKDTTQWSAADPSNTQTHPVTVSVPLVKEGMTYFFSGDYDGDQC-KSGQHFKIN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain