SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene18054

Length: 214 nt

UniGene Fasta

>biog3_v1.0_unigene18054
AATGTTGCTTTGCTACCATGTATCGAATTAATCTCCAATGGGGGGTCCCGCATTTGATTGCTTGAGAAACCCTCTGGGTGCCGTAAGATTCATGTTTGATAAAGCTGTCTCCGCAGGGGCTGATCCCTCGAAGCTTGGCAGGGGCGACTGGGGAGCGGCCGAGTTGTTCCACAAGTTTATCTTCCAGGACGGGGGTCTACTGCGAATCCCGGAA

Ace file of the UniGene biog3_v1.0_unigene18054

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene381	1/2
SustainPine v2.0	sp_v2.0_unigene17553	1/2

Source	Descriptions	Term	Type	Identity
AutoFact	E2F target protein 1 [Arabidopsis thaliana] sp\|Q501D5.1\|MCMBP_ARATH RecName: Full=Mini-chromosome maintenance complex-binding protein; Short=MCM-BP; Short=MCM-binding protein; AltName: Full=Protein E2F TARGET GENE 1 gb\|AAY25444.1\| At2g40550 [Arabidopsis t	-	-	46%
FL-Next	sp=Mini-chromosome maintenance complex-binding protein; Arabidopsis thaliana (Mouse-ear cress).	-	-	48%
Blast2go	mini-chromosome maintenance complex-binding	-	-	63%

Source	GOs	Term	Type	Identity
Blast2go	postreplication repair	GO:0006301	Biological Process	63%
Blast2go	DNA replication	GO:0006260	Biological Process	63%
Blast2go	sister chromatid cohesion	GO:0007062	Biological Process	63%
Blast2go	MCM complex	GO:0042555	Cellular Component	63%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	63%
Blast2go	nuclear replisome	GO:0043601	Cellular Component	63%

Source	InterPros	Term	Type	e value	Identity
Sma3	Mini-chromosome maintenance complex-binding protein	IPR019140	-	0.0	-
Sma3	Peptidase S26A, signal peptidase I, serine active site	IPR019756	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: Q501D5

Fln msg: Distance to subject end: 530 aas, your sequence is shorter than subject: 59 - 589

Fln protein: MGGPAFDCLRNPLGAVRFMFDKAVSAGADPSKLGRGDWGAAELFHKFIFQDGGLLRIPE

Protein Length: 60

Fln nts: AATGTTGCTTTGCTACCATGTATCGAATTAATCTCCA_-_ATGGGGGGTCCCGCATTTGATTGCTTGAGAAACCCTCTGGGTGCCGTAAGATTCATGTTTGATAAAGCTGTCTCCGCAGGGGCTGATCCCTCGAAGCTTGGCAGGGGCGACTGGGGAGCGGCCGAGTTGTTCCACAAGTTTATCTTCCAGGACGGGGGTCTACTGCGAATCCCGGAA

Fln Alignment:

biogeco3_mira_c14883___MGGPAFDCLRNPLGAVRFMFDKAVSAGADPSKLGRGDWGAAELFHKFIFQDGGLLRIP
Q501D5__________________MGGPAYDCLTNPLGAVRFSFVNALSSGYDPASSVGKDWGVVDLFRHYFSDESAISQVP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain