SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene17848

Length: 285 nt

UniGene Fasta

>biog3_v1.0_unigene17848
AATGTGTTGGTTTTGCAGCAAAAGCCATGAGTTCGGATTCCAATGACAGCGCCAAGCAAATGAAGTTTGTTTATGATCAAATGGAGCCGATGGAGAAGTGCGGGCAGCTCAACACCAGCCCAAGTCCTCACAGTTTATCTCTGTTCTCACCATCAAAGATGTATGTGTTTCTGAGAATAACGAACAAGAGACCTGATGGTTTCCATGATCTGGCATCACTGTTTCATGTAATTAGCTTAGGAGACACAATTCAGTTTTCTTTATCTCCAATGAGCACAAAGGATT

Ace file of the UniGene biog3_v1.0_unigene17848

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2431	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Type 1 4-diphosphocytidyl-2C-methyl-D-erythritol kinase n=1 Tax=Ginkgo biloba RepID=A6XAA8_GINBI	-	-	64%
FL-Next	sp=4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, chloroplastic; Arabidopsis thaliana (Mouse-ear cress).	-	-	60%
Blast2go	4-diphosphocytidyl-2-c-methyl-d-erythritol kinase	-	-	80%

Source	ECs	Term	Type	e value	Identity
Blast2go	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase.	EC:2.7.1.148	-	0.0	80%

Source	KEGGs	Term	Identity
Blast2go	Terpenoid backbone biosynthesis	00900	80%
Blast2go	Biosynthesis of terpenoids and steroids	01062	80%
Blast2go	Biosynthesis of alkaloids derived from terpenoid and polyketide	01066	80%
Blast2go	Biosynthesis of plant hormones	01070	80%
Blast2go	Metabolic pathways	01100	80%
Blast2go	Biosynthesis of secondary metabolites	01110	80%

Source	GOs	Term	Type	Identity
Blast2go	phosphorylation	GO:0016310	Biological Process	80%
Blast2go	terpenoid biosynthetic process	GO:0016114	Biological Process	80%
Blast2go	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity	GO:0050515	Molecular Function	80%
Blast2go	ATP binding	GO:0005524	Molecular Function	80%
Blast2go	chromoplast	GO:0009509	Cellular Component	80%
Blast2go	chloroplast	GO:0009507	Cellular Component	80%

Source	InterPros	Term	Type	Identity
Sma3	4-diphosphocytidyl-2C-methyl-D-erythritol kinase	IPR004424	-	-
Sma3	GHMP kinase N-terminal domain	IPR006204	-	-
Sma3	GHMP kinase, C-terminal domain	IPR013750	-	-
Sma3	Ribosomal protein S5 domain 2-type fold, subgroup	IPR014721	-	-
Sma3	Thioredoxin, conserved site	IPR017937	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: O81014

Fln msg: Distance to subject end: 261 aas, your sequence is shorter than subject: 94 - 383

Fln protein: CVGFAAKAMSSDSNDSAKQMKFVYDQMEPMEKCGQLNTSPSPHSLSLFSPSKMYVFLRITNKRPDGFHDLASLFHVISLGDTIQFSLSPMSTKD

Protein Length: 95

Fln nts: AATGTGTTGGTTTTGCAGCAAAAGCCATGAGTTCGGATTCCAATGACAGCGCCAAGCAAATGAAGTTTGTTTATGATCAAATGGAGCCGATGGAGAAGTGCGGGCAGCTCAACACCAGCCCAAGTCCTCACAGTTTATCTCTGTTCTCACCATCAAAGATGTATGTGTTTCTGAGAATAACGAACAAGAGACCTGATGGTTTCCATGATCTGGCATCACTGTTTCATGTAATTAGCTTAGGAGACACAATTCAGTTTTCTTTATCTCCAATGAGCACAAAGGATT

Fln Alignment:

biogeco3_mira_c14588___SAKQMKFVYDQMEPMEKCGQ-LNTXXXXXXXXXXXXXKMYVFLRITNKRPDGFHDLASLFHVISLGDTIQFSLSPMSTKD
O81014__________________SRKQVEIVFDPDERLNKIGDDVDKEAPLSRLKLFSPCKINVFLRITGKREDGFHDLASLFHVISLGDTIKFSLSPSKSKD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain