SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene17606

Length: 198 nt

UniGene Fasta

>biog3_v1.0_unigene17606
GAATGCCGAACCATCGGGAGCAATTCCATCTGTGAATGTTGAAGGTTCTTGTAACGGGTGCATCGGGATACTTGGGAGGAGGAATATGCCATGCACTGTCGAGAGAAGGGCATTCAGTCAGAGCCTTTGTACGGCGAAGTAGTGTTTTAGACAGCCTGCCAAACGGAGTCGAGACTGCTTATGGAGATGTAACACATT

Ace file of the UniGene biog3_v1.0_unigene17606

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene11539	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Rossmann-fold NAD(P)-binding domain-containing protein [Arabidopsis thaliana] gb\|AAK49584.1\|AF370578_1 putative protein [Arabidopsis thaliana] emb\|CAB38794.1\| putative protein [Arabidopsis thaliana] emb\|CAB80053.1\| putative protein [Arabidopsis thaliana]	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	rossmann-fold nad -binding domain-containing protein	-	-	81%

Source	ECs	Term	Type	e value	Identity
Blast2go	Dihydrokaempferol 4-reductase.	EC:1.1.1.219	-	0.0	81%

Source	KEGGs	Term	Type	Identity
Blast2go	Flavonoid biosynthesis	00941		81%
Blast2go	Biosynthesis of phenylpropanoids	01061		81%
Blast2go	Metabolic pathways	01100		81%
Blast2go	Biosynthesis of secondary metabolites	01110		81%
Blast2go	Farnesol dehydrogenase.	EC:1.1.1.216	-	81%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Sesquiterpenoid biosynthesis	00909		0.0	81%

Source	GOs	Term	Type	Identity
Blast2go	negative regulation of abscisic acid mediated signaling pathway	GO:0009788	Biological Process	81%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	81%
Blast2go	farnesol metabolic process	GO:0016487	Biological Process	81%
Blast2go	dihydrokaempferol 4-reductase activity	GO:0045552	Molecular Function	81%
Blast2go	coenzyme binding	GO:0050662	Molecular Function	81%
Blast2go	farnesol dehydrogenase activity	GO:0047886	Molecular Function	81%
Blast2go	mitochondrion	GO:0005739	Cellular Component	81%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	81%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	81%
Blast2go	plasma membrane	GO:0005886	Cellular Component	81%

Source	InterPros	Term	Type	e value	Identity
Sma3	NAD-dependent epimerase/dehydratase	IPR001509	-	0.0	-
Sma3	NAD(P)-binding domain	IPR016040	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NZJ7

Fln msg: Distance to subject end: 279 aas, your sequence is shorter than subject: 54 - 332

Fln protein: MLKVLVTGASGYLGGGICHALSREGHSVRAFVRRSSVLDSLPNGVETAYGDVTH

Protein Length: 55

Fln nts: GAATGCCGAACCATCGGGAGCAATTCCATCTGTGA_-_ATGTTGAAGGTTCTTGTAACGGGTGCATCGGGATACTTGGGAGGAGGAATATGCCATGCACTGTCGAGAGAAGGGCATTCAGTCAGAGCCTTTGTACGGCGAAGTAGTGTTTTAGACAGCCTGCCAAACGGAGTCGAGACTGCTTATGGAGATGTAACACATT

Fln Alignment:

biogeco3_mira_c14256___LKVLVTGASGYLGGGICHALSREGHSVRAFVRRSSVLDSLPNGVETAYGDVT
A9NZJ7__________________MKVLVTGASGYLGGGICHALYREGHSIRAFVRRSSVLDNLPNEVETAYGDVT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain