SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene17468

Length: 216 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene17468
CGGGATCCTCAACCCCGAGGGAGGGAGGGAACGAGTGATAAGCAGCAATGGGGATGCGAATACTGAACGAGGCGCTGAGAAAAATGGTGAATGCAGAGAAGAGAGGTTTCTCCTCCGTTGAGCTCCAGCCGATGTCATTCCTCATGGTCAATTATCTCAAGGTCATGAAAATCGAGGTTATATCAAAGATTTTGAAGTGTTTGAGCCTCATACATT

Ace file of the UniGene biog3_v1.0_unigene17468 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8622	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	40S ribosomal protein S15a-5 [Arabidopsis thaliana] ref\|XP_002869431.1\| RPS15AE [Arabidopsis lyrata subsp. lyrata] sp\|Q9M0E0.1\|R15A5_ARATH RecName: Full=40S ribosomal protein S15a-5 emb\|CAB79701.1\| ribosomal protein S15a homolog [Arabidopsis thaliana] gb\|	-	-	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	87%
Blast2go	40s ribosomal protein s15a-5	-	-	86%

Source	GOs	Term	Type	Identity
Blast2go	translation	GO:0006412	Biological Process	86%
Blast2go	structural constituent of ribosome	GO:0003735	Molecular Function	86%
Blast2go	vacuole	GO:0005773	Cellular Component	86%
Blast2go	cytosolic small ribosomal subunit	GO:0022627	Cellular Component	86%
Blast2go	mitochondrion	GO:0005739	Cellular Component	86%

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein S8	IPR000630	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PQ94

Fln msg: Overlapping hits, possible frame ERROR between 170 and 167, Distance to subject end: 72 aas, your sequence is shorter than subject: 56 - 129

Fln protein: MGMRILNEALRKMVNAEKRGFSSVELQPMSFLMVNYLKVxxxRGYIKDFEVFEPHT

Protein Length: 57

Fln nts: CGGGATCCTCAACCCCGAGGGAGGGAGGGAACGAGTGATAAGCAGCA_-_ATGGGGATGCGAATACTGAACGAGGCGCTGAGAAAAATGGTGAATGCAGAGAAGAGAGGTTTCTCCTCCGTTGAGCTCCAGCCGATGTCATTCCTCATGGTCAATTATCTCAAGGTCxxxxxxxxxCGAGGTTATATCAAAGATTTTGAAGTGTTTGAGCCTCATACATT

Fln Alignment:

biogeco3_mira_c14045___MGMRILNEALRKMVNAEKRGFSSVELQPMSFLMVNYLKVMxNRGYIKDFEVFEPH
C0PQ94__________________MGMRILNEALRKMVNAEKRGFTKVQLQPMSLLMVNYLNVMxSRGYIKDFEVFEPH

SSRs (tot: 1)

Start position	End position	Sequence	Length
187	200	TCCC TCCC TCCC TC	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain