SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene17032

Length: 361 nt

UniGene Fasta

>biog3_v1.0_unigene17032
TGGAATCTACTAGCTTTTTATACATTAGTGCCTTCAAAATACCATTTTCCAATCCATTTTTGGTATATTATAATGGCAGGCTACGTGGGTGTATTGGTTTCAGATCCTTGGCTTCAGAGCCAGTTCGCCCAGACAGAACTTCGAACTTTAAAATCACAGTATGCATCCATGAAGAAGGAGAAGGGCGAATTAACTGCAGGGGATTTGAGTTCTGGATTAGACTAAACTGAAAGCTTTTGAGGAGTTGCTCAGCGAGGAGGACGTAGGGGCTGTTGTGGCCGAATACCATTCAAATGCAGAAGAGTTGGTGGATTTCGAAGGTTTTCTACGGATTGTATCTTAATTTGCAGACACTGGCAAA

Ace file of the UniGene biog3_v1.0_unigene17032

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene31892	1/2
SustainPine v2.0	sp_v2.0_unigene77807	1/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Fimbrin, putative n=1 Tax=Ricinus communis RepID=B9T216_RICCO	-	-	7.0e-21	57%
FL-Next	sp=Fimbrin-like protein 2; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	57%
Blast2go	fimbrin-like protein 2-like	-	-	1.48467e-23	71%

Source	GOs	Term	Type	e value	Identity
Blast2go	pollen germination	GO:0009846	Biological Process	1.48467e-23	71%
Blast2go	pollen tube growth	GO:0009860	Biological Process	1.48467e-23	71%
Blast2go	actin cytoskeleton organization	GO:0030036	Biological Process	1.48467e-23	71%
Blast2go	actin filament binding	GO:0051015	Molecular Function	1.48467e-23	71%

Source	InterPros	Term	Type	e value	Identity
Sma3	Actinin-type, actin-binding, conserved site	IPR001589	-	0.0	-
Sma3	Calponin homology domain	IPR001715	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: Q9FKI0

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 591 aas, your sequence is shorter than subject: 51 - 687

Fln protein: MAGYVGVLVSDPWLQSQFAQTELRTLKSQYASMKKEKGELTAGDLSSGLD*

Protein Length: 52

Fln nts: TGGAATCTACTAGCTTTTTATACATTAGTGCCTTCAAAATACCATTTTCCAATCCATTTTTGGTATATTATA_-_ATGGCAGGCTACGTGGGTGTATTGGTTTCAGATCCTTGGCTTCAGAGCCAGTTCGCCCAGACAGAACTTCGAACTTTAAAATCACAGTATGCATCCATGAAGAAGGAGAAGGGCGAATTAACTGCAGGGGATTTGAGTTCTGGATTAGACTAAACTGAAAGCTTTTGAGGAGTTGCTCAGCGAGGAGGACGTAGGGGCTGTTGTGGCCGAATACCATTCAAATGCAGAAGAGTTGGTGGATTTCGAAGGTTTTCTACGGATTGTATCTTAATTTGCAGACACTGGCAAA

Fln Alignment:

biogeco3_mira_c13426___MAGYVGVLVSDPWLQSQFAQTELRTLKSQYASMKKEKGELTAGDLSSGLD*TESF*G
Q9FKI0__________________MSSYVGVLVSDPWLQSQFTQVELRTLKSKFVSNKTQLGRFTVGDLPPVFEKLKAFNG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain