SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene16985

Length: 256 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene16985
TTCCATGGGCGATTTGACATCAAATNTTGCACTGGCATCGAACAGTCGTGATGGAGTGCAGATTGCCATGTCTGGTTGCTATGCAGGGCCGATGTTCAATACACTCGCTGGATTGGGAATGTCCTTGGTGTTAGGGGCCTGGATGAACCAGCCTTACTTCATGATTCCAAAGGATGCTAGTCTTTTCTACACGACAGGCTTCCTTGCTGCTGCACTTATCTGGGACACTGGTTGTTTTGCCGAGGAATCATACATT

Ace file of the UniGene biog3_v1.0_unigene16985 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5388	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	cation/calcium exchanger 3 [Arabidopsis thaliana] sp\|Q9LJI2.1\|CCX3_ARATH RecName: Full=Cation/calcium exchanger 3; Short=AtCCX3; AltName: Full=Protein CATION CALCIUM EXCHANGER 3; AltName: Full=Protein CATION EXCHANGER 9 dbj\|BAB02970.1\| Na/Ca,K-exchanger-l	-	-	42%
FL-Next	sp=Cation/calcium exchanger 4; Arabidopsis thaliana (Mouse-ear cress).	-	-	70%
Blast2go	cation calcium exchanger 4	-	-	63%

Source	GOs	Term	Type	Identity
Blast2go	cellular cation homeostasis	GO:0030003	Biological Process	63%
Blast2go	sodium ion export	GO:0071436	Biological Process	63%
Blast2go	response to cation stress	GO:0043157	Biological Process	63%
Blast2go	manganese ion transmembrane transport	GO:0071421	Biological Process	63%
Blast2go	sodium ion transmembrane transporter activity	GO:0015081	Molecular Function	63%
Blast2go	potassium ion transmembrane transporter activity	GO:0015079	Molecular Function	63%
Blast2go	manganese ion transmembrane transporter activity	GO:0005384	Molecular Function	63%
Blast2go	cytoplasmic vesicle membrane	GO:0030659	Cellular Component	63%
Blast2go	mitochondrion	GO:0005739	Cellular Component	63%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	63%
Blast2go	potassium ion transmembrane transport	GO:0071805	Biological Process	63%

Source	InterPros	Term	Type	e value	Identity
Sma3	Sodium/calcium exchanger membrane region	IPR004837	-	0.0	-
Sma3	Sugar transporter, conserved site	IPR005829	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9SYG9

Fln msg: Distance to subject end: 32 aas, your sequence is shorter than subject: 85 - 644

Fln protein: SMGDLTSNFALASNSRDGVQIAMSGCYAGPMFNTLAGLGMSLVLGAWMNQPYFMIPKDASLFYTTGFLAAALIWDTGCFAEESYI

Protein Length: 86

Fln nts: TTCCATGGGCGATTTGACATCAAATtTTGCACTGGCATCGAACAGTCGTGATGGAGTGCAGATTGCCATGTCTGGTTGCTATGCAGGGCCGATGTTCAATACACTCGCTGGATTGGGAATGTCCTTGGTGTTAGGGGCCTGGATGAACCAGCCTTACTTCATGATTCCAAAGGATGCTAGTCTTTTCTACACGACAGGCTTCCTTGCTGCTGCACTTATCTGGGACACTGGTTGTTTTGCCGAGGAATCATACATT

Fln Alignment:

biogeco3_mira_c13353___SMGDLTSNFALASNSRDGVQIAMSGCYAGPMFNTLAGLGMSLVLGAWMNQP-YFMIPKDASLFYTTGFLAAALIW
Q9SYG9__________________SMGDLVSNIALSMNGGDGVQIALSGCYAGPMFNTLVGLGMSMFLGAWSKSPETYMIPEDNSLFYTLGFLIFGLIW

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain