SustainPineDB

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Assembly info
Unigenes
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GOs
ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene16817

Length: 315 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene16817
CATGGGAGCTCAGGTTCTTGGTTCCATATGTGCGGCGTTCGCTCTGAAGTTAATATTTCATCCATTCGCGAGCGTGGGGTTACGATTCCCGCAGGAAGCTACGCTCAGGCTTTTGCTTTGGAATTCATCATCACTTTCAATCTCATGTTCGTCGTTACAGCAGTAGCCACAGACACTCGAGCTGTGGGTGAACTTGCAGGAATTGCAGTAGGGGCTACGGTTATGCTCAATATTCTCATCGCAGGATCGAACTCCGGAGGTTCCATGAATCCGGTTCGAACCCTGGGGCCTGCAATTGCAGCAGGCAACTACATT

Ace file of the UniGene biog3_v1.0_unigene16817 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1433	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Aquaporin, MIP family, NIP subfamily n=2 Tax=Malpighiales RepID=B9GMB9_POPTR	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	76%
Blast2go	mip nip subfamily	-	-	76%

Source	GOs	Term	Type	Identity
Blast2go	borate transmembrane transport	GO:0035445	Biological Process	76%
Blast2go	arsenite transport	GO:0015700	Biological Process	76%
Blast2go	response to arsenic-containing substance	GO:0046685	Biological Process	76%
Blast2go	glycerol transport	GO:0015793	Biological Process	76%
Blast2go	cellular response to boron-containing substance levels	GO:0080029	Biological Process	76%
Blast2go	borate uptake transmembrane transporter activity	GO:0080138	Molecular Function	76%
Blast2go	borate transmembrane transporter activity	GO:0046715	Molecular Function	76%
Blast2go	glycerol transmembrane transporter activity	GO:0015168	Molecular Function	76%
Blast2go	arsenite transmembrane transporter activity	GO:0015105	Molecular Function	76%
Blast2go	urea transmembrane transporter activity	GO:0015204	Molecular Function	76%
Blast2go	water channel activity	GO:0015250	Molecular Function	76%
Blast2go	lateral plasma membrane	GO:0016328	Cellular Component	76%
Blast2go	integral to membrane	GO:0016021	Cellular Component	76%
Blast2go	urea transmembrane transport	GO:0071918	Biological Process	76%

Source	InterPros	Term	Type	Identity
Sma3	Major intrinsic protein	IPR000425	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Aquaporin	IPR012269	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AB86

Fln msg: Overlapping hits, possible frame ERROR between 91 and 76, Distance to subject end: 40 aas, your sequence is shorter than subject: 105 - 294

Fln protein: MGAQVLGSICAAFALKLIFHPFASxxxxxxxGSYAQAFALEFIITFNLMFVVTAVATDTRAVGELAGIAVGATVMLNILIAGSNSGGSMNPVRTLGPAIAAGNYI

Protein Length: 106

Fln nts: CATGGGAGCTCAGGTTCTTGGTTCCATATGTGCGGCGTTCGCTCTGAAGTTAATATTTCATCCATTCGCGAGCxxxxxxxxxxxxxxxxxxxxxGGAAGCTACGCTCAGGCTTTTGCTTTGGAATTCATCATCACTTTCAATCTCATGTTCGTCGTTACAGCAGTAGCCACAGACACTCGAGCTGTGGGTGAACTTGCAGGAATTGCAGTAGGGGCTACGGTTATGCTCAATATTCTCATCGCAGGATCGAACTCCGGAGGTTCCATGAATCCGGTTCGAACCCTGGGGCCTGCAATTGCAGCAGGCAACTACATT

Fln Alignment:

biogeco3_mira_c13100___MGAQVLGSICAAFALKLIFHPFASVxxxxxAGSYAQAFALEFIITFNLMFXXXXXXXXXXXVGELAGIAVGATVMLNILIAGSNSGGSMNPVRTLGPAIAAGNY
D5AB86__________________MGAQVLGSICASFTLKLIFHPFMSGxxxxxSGSYGQAFALEFIITFNLMFVVTAVATDTRAVGELAGIAVGATVMLNILIAGSNSGASMNPVRTLGPAIAAGNY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain