SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene16481

Length: 281 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene16481
CTTCTGCAGCTATGGCTATCAACGTCCCTCGCCCTCTTATCAAGTGGATGTCAATTTTCAGTGATGCAGGAGCTCCTTTGTTGATTCACCTATCTACAGATCAAGTCTACGAGGGAGTCAAGTCTTTTTACAAGGAAGACGATGAAACAAATGCTGTAAATATGTATGGAAAGTCAAAAGTTATGGCAGAAGATTATATCCGCTCAAACTATTCAAGTTATGCAATTTTAAGAAGCAGCATAATTTATACACCCCATCCAGTCATTCCTGTTGAGAACATT

Ace file of the UniGene biog3_v1.0_unigene16481 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3836	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	3-beta hydroxysteroid dehydrogenase/isomerase n=4 Tax=Andropogoneae RepID=B6TQB4_MAIZE	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	rossmann-fold nad -binding domain-containing protein	-	-	78%

Source	ECs	Term	Type	e value	Identity
Blast2go	dTDP-4-dehydrorhamnose reductase.	EC:1.1.1.133	-	0.0	78%

Source	KEGGs	Term	Identity
Blast2go	Polyketide sugar unit biosynthesis	00523	78%
Blast2go	Metabolic pathways	01100	78%
Blast2go	Biosynthesis of secondary metabolites	01110	78%

Source	GOs	Term	Type	Identity
Blast2go	extracellular polysaccharide biosynthetic process	GO:0045226	Biological Process	78%
Blast2go	dTDP-4-dehydrorhamnose reductase activity	GO:0008831	Molecular Function	78%
Blast2go	isomerase activity	GO:0016853	Molecular Function	78%
Blast2go	binding	GO:0005488	Molecular Function	78%

Source	InterPros	Term	Type	Identity
Sma3	NAD-dependent epimerase/dehydratase	IPR001509	-	-
Sma3	dTDP-4-dehydrorhamnose reductase	IPR005913	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5ACJ6

Fln msg: Distance to subject end: 129 aas, your sequence is shorter than subject: 93 - 317

Fln protein: SAAMAINVPRPLIKWMSIFSDAGAPLLIHLSTDQVYEGVKSFYKEDDETNAVNMYGKSKVMAEDYIRSNYSSYAILRSSIIYTPHPVIPVENI

Protein Length: 94

Fln nts: CTTCTGCAGCTATGGCTATCAACGTCCCTCGCCCTCTTATCAAGTGGATGTCAATTTTCAGTGATGCAGGAGCTCCTTTGTTGATTCACCTATCTACAGATCAAGTCTACGAGGGAGTCAAGTCTTTTTACAAGGAAGACGATGAAACAAATGCTGTAAATATGTATGGAAAGTCAAAAGTTATGGCAGAAGATTATATCCGCTCAAACTATTCAAGTTATGCAATTTTAAGAAGCAGCATAATTTATACACCCCATCCAGTCATTCCTGTTGAGAACATT

Fln Alignment:

biogeco3_mira_c12635___SAAMAINVPRPLIKWMSIFSDAGAPLLIHLSTDQVYEGVKSFYKEDDETNAVNMYGKSKVMAEDYIRSNYSSYAILRSSIIYTPHPVIPVE
D5ACJ6__________________SAATAINVPRPLIKWMSTFSDRGAPLLIHLSTDQVYEGVKSFYKEDDETNAVNMYGKSKVMAENYICSNFSSYAILRSSIIYGPHPVIPVE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain