SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
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miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene16451

Length: 273 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene16451
GGATAACTTCGAAGGCCGTTGCAGAGACCTTCATCCGGGGCCTGCGAGTTTACTGCACTGGAGTGGCAAGGGAAACCTTGGCTACGTATTGATCTGAGGCAGTCTTGTCCTCTGGATTTACTCTGGGCTCCGTACGACCTTTTTCAGCCCGCTTACAATTATTTAGATGTTTGAAACTTCAAGTCTTTCTTTAAGATGGAGCTGTGGTACTCGGCCCTCTTTAATTGCTCCTACTGCAGAAGGTTCTCCAGATAAATTAGAGACATGTACATT

Ace file of the UniGene biog3_v1.0_unigene16451 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10008	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Glycosyltransferase, CAZy family GT8 n=1 Tax=Populus trichocarpa RepID=B9HIY9_POPTR	-	-	64%
FL-Next	sp=Probable galacturonosyltransferase-like 3; Arabidopsis thaliana (Mouse-ear cress).	-	-	83%
Blast2go	cazy family gt8	-	-	75%

Source	ECs	Term	Type	e value	Identity
Blast2go	Polygalacturonate 4-alpha-galacturonosyltransferase.	EC:2.4.1.43	-	0.0	75%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Starch and sucrose metabolism	00500		0.0	75%
Blast2go	Amino sugar and nucleotide sugar metabolism	00520		0.0	75%

Source	GOs	Term	Type	Identity
Blast2go	carbohydrate biosynthetic process	GO:0016051	Biological Process	75%
Blast2go	polygalacturonate 4-alpha-galacturonosyltransferase activity	GO:0047262	Molecular Function	75%
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	75%
Blast2go	pollen tube	GO:0090406	Biological Process	75%

Source	InterPros	Term	Type	e value	Identity
Sma3	Glycosyl transferase, family 8	IPR002495	-	0.0	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q0V7R1

Fln msg: Overlapping hits, possible frame ERROR between 73 and 58, your sequence is shorter than subject: 58 - 345

Fln protein: DNFEGRCRDLHPGPASLLxxxxxxxPWLRIDLRQSCPLDLLWAPYDLFQPAYNYLDV*

Protein Length: 59

Fln nts: GGATAACTTCGAAGGCCGTTGCAGAGACCTTCATCCGGGGCCTGCGAGTTTACTGxxxxxxxxxxxxxxxxxxxxxCCTTGGCTACGTATTGATCTGAGGCAGTCTTGTCCTCTGGATTTACTCTGGGCTCCGTACGACCTTTTTCAGCCCGCTTACAATTATTTAGATGTTTGAAACTTCAAGTCTTTCTTTAAGATGGAGCTGTGGTACTCGGCCCTCTTTAATTGCTCCTACTGCAGAAGGTTCTCCAGATAAATTAGAGACATGTACATT

Fln Alignment:

biogeco3_mira_c12595___DNFEGRCRDLHPGPASLxxxxxxxKPWLRIDLRQSCPLDLLWAPYDLFQ
Q0V7R1__________________DNLEGLCRNLHPGPVSLxxxxxxxKPWLRLDSRRPCPLDSLWAPYDLFR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain