SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene16363

Length: 291 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene16363
AATGTATTCTTTGAGCTCCTAATCAAGATCTATTTCAAGAACGTCCACCCCAATTTCCCCCAAGGGGGCCTCATGTCGCAGTACCTGGAGGGCTTGGCTCTGAACAATTCCATAGACGTCAAGGGACCTCTTGGTCACATCCAGTACAGCGGGCGGGGAAATTTCACCATCAATGGAAAGCACAAATCAGCCAAGAAAATCGCAATGCTGGCAGGGGGCACGGGATTACGCCTCTCTATCAAATCATCAGAGCCATTCTCAAAGATCCCGAGGACGAGACTGAGATGATTC

Ace file of the UniGene biog3_v1.0_unigene16363 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7944	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	RecName: Full=Nitrate reductase [NADH]; Short=NR gb\|AAA33114.1\| nitrate reductase [Cucurbita maxima]	-	-	57%
FL-Next	sp=Nitrate reductase [NADH] 2; Phaseolus vulgaris (Kidney bean) (French bean).	-	-	62%
Blast2go	nitrate reductase	-	-	72%

Source	ECs	Term	Type	e value	Identity
Blast2go	Oxidoreductases, Acting on other nitrogenous compounds as donors, With NAD(+) or NADP(+) as acceptor.	EC:1.7.1.-	-	0.0	72%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Aminobenzoate degradation	00627		0.0	72%
Blast2go	Nitrotoluene degradation	00633		0.0	72%

Source	GOs	Term	Type	Identity
Blast2go	metabolic process	GO:0008152	Biological Process	72%
Blast2go	oxidoreductase activity, acting on other nitrogenous compounds as donors, with NAD or NADP as acceptor	GO:0046857	Molecular Function	72%
Blast2go	iron ion binding	GO:0005506	Molecular Function	72%

Source	InterPros	Term	Type	Identity
Sma3	Oxidoreductase, molybdopterin-binding domain	IPR000572	-	-
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	Cytochrome b5	IPR001199	-	-
Sma3	Oxidoreductase FAD/NAD(P)-binding	IPR001433	-	-
Sma3	Flavoprotein pyridine nucleotide cytochrome reductase	IPR001709	-	-
Sma3	NADH:cytochrome b5 reductase (CBR)	IPR001834	-	-
Sma3	Moybdenum cofactor oxidoreductase, dimerisation	IPR005066	-	-
Sma3	Remorin, C-terminal	IPR005516	-	-
Sma3	Oxidoreductase, FAD-binding domain	IPR008333	-	-
Sma3	Eukaryotic molybdopterin oxidoreductase	IPR008335	-	-
Sma3	Nitrate reductase NADH dependent	IPR012137	-	-
Sma3	Ferredoxin reductase-type FAD-binding domain	IPR017927	-	-
Sma3	Cytochrome b5, heme-binding site	IPR018506	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: P39866

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 97 aas, your sequence is shorter than subject: 96 - 890

Fln protein: NVFFELLIKIYFKNVHPNFPQGGLMSQYLEGLALNNSIDVKGPLGHIQYSGRGNFTINGKHKSAKKIAMLAGGTGLRLSIKSSEPFSKIPRTRLR*

Protein Length: 97

Fln nts: AATGTATTCTTTGAGCTCCTAATCAAGATCTATTTCAAGAACGTCCACCCCAATTTCCCCCAAGGGGGCCTCATGTCGCAGTACCTGGAGGGCTTGGCTCTGAACAATTCCATAGACGTCAAGGGACCTCTTGGTCACATCCAGTACAGCGGGCGGGGAAATTTCACCATCAATGGAAAGCACAAATCAGCCAAGAAAATCGCAATGCTGGCAGGGGGCACGGGATTACGCCTCTCTATCAAATCATCAGAGCCATTCTCAAAGATCCCGAGGACGAGACTGAGATGATTC

Fln Alignment:

biogeco3_mira_c12464___FFELLIKIYFKNVHPNFPQGGLMSQYLEGLALNNSIDVKGPLGHIQYSGRGNFTINGKHKSAKKIAMLAGGTGLRLSIKSSEPFSKIP
P39866__________________FFDLLIKVYFKDVHPKFPNGGLMSQYLESLSIGSMLDVKGPLGHIEYTGRGNFTVNGKSRFAKRLAMLAGGTGITPIYQVAQAILKDP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain