SustainPineDB

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Assembly info
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene15913

Length: 284 nt

UniGene Fasta

>biog3_v1.0_unigene15913
AATGTACCATACCCTGCAATCCTTGAAGCTTGAAAGAAATCCAATGGGAGGAGAAGGAATTTATCATTTGCTTTGTCCTCTAAGTAGGTTCAAACCAGGCCAGCCTCAAGCAAATACTTCTCTGAAATTTTTGTCCATTGGCGGACCTCAGAATAAAATGGGTAGTTCTGGTGTAAGTGCATTGGTGCAGATGATCTCCACAAACCAGAGTTTGCTCAAATTCGCTATAAATGATGACCGTAGCATGGGTGCAGCTGATCTCATCAAAATTCTTGTAGCTCTAC

Ace file of the UniGene biog3_v1.0_unigene15913

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene54504	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	protein tornado 1 [Arabidopsis thaliana] dbj\|BAB08571.1\| unnamed protein product [Arabidopsis thaliana] gb\|AED96644.1\| protein tornado 1 [Arabidopsis thaliana]	-	-	6.00036e-42	50%
FL-Next	tr=Putative uncharacterized protein Sb01g007920; Sorghum bicolor (Sorghum) (Sorghum vulgare).	-	-	0.0	52%
Blast2go	nucleotide-binding oligomerization domain-containing protein	-	-	0.0	68%

Source	GOs	Term	Type	Identity
Blast2go	multidimensional cell growth	GO:0009825	Biological Process	68%
Blast2go	meristem structural organization	GO:0009933	Biological Process	68%
Blast2go	auxin polar transport	GO:0009926	Biological Process	68%
Blast2go	leaf morphogenesis	GO:0009965	Biological Process	68%
Blast2go	leaf vascular tissue pattern formation	GO:0010305	Biological Process	68%
Blast2go	nuclear import	GO:0051170	Biological Process	68%
Blast2go	radial pattern formation	GO:0009956	Biological Process	68%
Blast2go	protein transporter activity	GO:0008565	Molecular Function	68%
Blast2go	cytoplasm	GO:0005737	Cellular Component	68%
Blast2go	nucleus	GO:0005634	Cellular Component	68%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: C5X0B1

Fln msg: Distance to subject end: 29 aas, your sequence is shorter than subject: 94 - 456

Fln protein: MYHTLQSLKLERNPMGGEGIYHLLCPLSRFKPGQPQANTSLKFLSIGGPQNKMGSSGVSALVQMISTNQSLLKFAINDDRSMGAADLIKILVAL

Protein Length: 95

Fln nts: AATGTACCATACCCTGCAATCCTTGAAGCTTGAAAGAAATCCAATGGGAGGAGAAGGAATTTATCATTTGCTTTGTCCTCTAAGTAGGTTCAAACCAGGCCAGCCTCAAGCAAATACTTCTCTGAAATTTTTGTCCATTGGCGGACCTCAGAATAAAATGGGTAGTTCTGGTGTAAGTGCATTGGTGCAGATGATCTCCACAAACCAGAGTTTGCTCAAATTCGCTATAAATGATGACCGTAGCATGGGTGCAGCTGATCTCATCAAAATTCTTGTAGCTCTAC

Fln Alignment:

biogeco3_mira_c11813___LQSLKLERNPMGGEGIYHLLCPLSRFKPGQPQANTSLKFLSIGGPQNKMGSSGVSALVQMISTNQSLLKFAINDDRSMGAADLIKILVAL
C5X0B1__________________LENLTLDGNRFGGVGLEHLLCPLSTFSPLQRQANTTLKVLSFGGERANIGKYGVSAILQMLETNQSLIQLAICNDASLKPNDVVKIFTSL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain