SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene15672

Length: 263 nt

UniGene Fasta

>biog3_v1.0_unigene15672
AATGTATGATCGGCCATTTACATTGTCAATGGCAAATGCTGGTCCAAATACAAATGGCTCTCAATTCTTTATCACAACTGTAGCTACTCCATGGCTAGACAATAAGCATACAGTGTTTGGACGAGTTGTGAAGGGAATGGATGTTGTGCAGGGAATAGAGAAAGTAAAGACTGATAAGAACGATAAGCCATACCAAGATATAAAGATTTTGAATGTGACTGTTCCAAAGTCATAGCTAATGCACTACAGGTGCAATCTTTGAT

Ace file of the UniGene biog3_v1.0_unigene15672

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene14882	1/2
SustainPine v2.0	sp_v2.0_unigene28869	1/2

Source	Descriptions	Term	Type	Identity
AutoFact	putative cyclophilin (70.8 kD) (cyp-15) [Oryza sativa Japonica Group]	-	-	88%
FL-Next	sp=Peptidyl-prolyl cis-trans isomerase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	71%
Blast2go	peptidylprolyl isomerase domain and wd repeat-containing protein 1	-	-	94%

Source	GOs	Term	Type	Identity
Blast2go	sepal formation	GO:0048453	Biological Process	94%
Blast2go	leaf formation	GO:0010338	Biological Process	94%
Blast2go	carpel development	GO:0048440	Biological Process	94%
Blast2go	meristem structural organization	GO:0009933	Biological Process	94%
Blast2go	leaf shaping	GO:0010358	Biological Process	94%
Blast2go	regulation of flower development	GO:0009909	Biological Process	94%
Blast2go	leaf vascular tissue pattern formation	GO:0010305	Biological Process	94%
Blast2go	stamen development	GO:0048443	Biological Process	94%
Blast2go	regulation of root meristem growth	GO:0010082	Biological Process	94%
Blast2go	regulation of histone methylation	GO:0031060	Biological Process	94%
Blast2go	histone binding	GO:0042393	Molecular Function	94%
Blast2go	chromatin binding	GO:0003682	Molecular Function	94%
Blast2go	nucleus	GO:0005634	Cellular Component	94%

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain	IPR001179	-	-
Sma3	Tetratricopeptide TPR-1	IPR001440	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	Cyclophilin-like peptidyl-prolyl cis-trans isomerase domain	IPR002130	-	-
Sma3	U box domain	IPR003613	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3	Tetratricopeptide TPR2	IPR013105	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NNI6

Fln msg: your sequence is shorter than subject: 78 - 163

Fln protein: MYDRPFTLSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVVKGMDVVQGIEKVKTDKNDKPYQDIKILNVTVPKS*

Protein Length: 79

Fln nts: AATGTATGATCGGCCATTTACATTGTCAATGGCAAATGCTGGTCCAAATACAAATGGCTCTCAATTCTTTATCACAACTGTAGCTACTCCATGGCTAGACAATAAGCATACAGTGTTTGGACGAGTTGTGAAGGGAATGGATGTTGTGCAGGGAATAGAGAAAGTAAAGACTGATAAGAACGATAAGCCATACCAAGATATAAAGATTTTGAATGTGACTGTTCCAAAGTCATAG___CTAATGCACTACAGGTGCAATCTTTGAT

Fln Alignment:

biogeco3_mira_c11476___LSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVVKGMDVVQGIEKVKTDKNDKPYQDIKILNVTV
A9NNI6__________________LSMANAGPNTNGSQFFISLAPTPWLDEKHTIFGRVCKGMDVVKRLGNVQTDKNDRPIHDVKILRTTV

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain