SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene15490

Length: 300 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene15490
GCCCTCTGTCTGATCTTGGGTTATTAAGTTACAGAGGATACTGGACAAGGATCCTTCTTGACATTCTTAAGAAACATAGGGGTAACATTTCAATCAAGGAACTTAGTGACATGACAGCTATCAAGGTAGAAGATGTTATCAGTACACTGCAAGTGTTGGATCTTATTCAGTATCGGAAAGGACAGCATGTTATATGCGCCGATCCGAAGGTTTTAGATCGTCACTTGAAAGCCGCTGGAATAGCTACATTGGAAATTGATGTATCTAAGCTTATACTGGACTCCCTACAAAGAGCAATGT

Ace file of the UniGene biog3_v1.0_unigene15490 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene12722	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Histone acetyltransferase n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RJM4_PHYPA	-	-	81%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	85%
Blast2go	histone acetyltransferase	-	-	85%

Source	ECs	Term	Type	e value	Identity
Blast2go	Histone acetyltransferase.	EC:2.3.1.48	-	0.0	85%

Source	GOs	Term	Type	Identity
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	85%
Blast2go	chromatin assembly or disassembly	GO:0006333	Biological Process	85%
Blast2go	cell division	GO:0051301	Biological Process	85%
Blast2go	root hair cell tip growth	GO:0048768	Biological Process	85%
Blast2go	maintenance of shoot apical meristem identity	GO:0010492	Biological Process	85%
Blast2go	histone acetylation	GO:0016573	Biological Process	85%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	85%
Blast2go	histone acetyltransferase activity	GO:0004402	Molecular Function	85%
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	85%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	85%
Blast2go	chromatin binding	GO:0003682	Molecular Function	85%
Blast2go	chromatin	GO:0000785	Cellular Component	85%
Blast2go	nucleus	GO:0005634	Cellular Component	85%
Blast2go	mitochondrion	GO:0005739	Cellular Component	85%

Source	InterPros	Term	Type	Identity
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	Thiolase	IPR002155	-	-
Sma3	MOZ/SAS-like protein	IPR002717	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	Winged helix-turn-helix transcription repressor DNA-binding	IPR011991	-	-
Sma3	Zinc finger, C2H2-like	IPR015880	-	-
Sma3	Acyl-CoA N-acyltransferase	IPR016181	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUX9

Fln msg: STOP codon was not found. Distance to subject end: 1 aas, your sequence is shorter than subject: 99 - 458

Fln protein: PLSDLGLLSYRGYWTRILLDILKKHRGNISIKELSDMTAIKVEDVISTLQVLDLIQYRKGQHVICADPKVLDRHLKAAGIATLEIDVSKLILDSLQRAM

Protein Length: 100

Fln nts: GCCCTCTGTCTGATCTTGGGTTATTAAGTTACAGAGGATACTGGACAAGGATCCTTCTTGACATTCTTAAGAAACATAGGGGTAACATTTCAATCAAGGAACTTAGTGACATGACAGCTATCAAGGTAGAAGATGTTATCAGTACACTGCAAGTGTTGGATCTTATTCAGTATCGGAAAGGACAGCATGTTATATGCGCCGATCCGAAGGTTTTAGATCGTCACTTGAAAGCCGCTGGAATAGCTACATTGGAAATTGATGTATCTAAGCTTATACTGGACTCCCTACAAAGAGCAATGT

Fln Alignment:

biogeco3_mira_c10924___PLSDLGLLSYRGYWTRILLDILKKHRGNISIKELSDMTAIKVEDVISTLQVLDLIQYRKGQHVICADPKVLDRHLKAAGIATLEIDVSKLI
A9NUX9__________________PLSDLGLLSYRGYWTRVLLDILKKHKNNISIKELSDMTAIKAEDVLSTLQGLDLIQYRKGQHAICADPKVLDRHLKAVGRGGLEVDVCKLI

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
52	66		33		0.997476
53		33		66	0.997476
54		33	66		0.997476
55		33		66	0.997476
163		33	66		0.997459
166	66			33	0.997464

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain