SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene15356

Length: 365 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene15356
AATGTTGCTCTAAGTTGCAGAATACCTTTAGTCAGCGATATACCAACAATAATTTTTGGAGCAGACGTAACTCATCCAGAGAATGGAGAGGACTCCAGTCCATCCATAGCAGCTGTTGTTGCTTCCCAAGATTGGCCAGAAGTCACAAAATATGCAGGCTTGGTATGCGCTCAGGCACACCGGCAAGAGCTGATTCAAGATTTATTTAAGACCTGGCAGGATCCTGTGAGGGGCACTGTATTTGGCGGCATGATAAGGGAGCACTTAATTTCTTTTAGAAAAGCAACGGGACAGAAGCCTTTACGAATCATATTTTACAGAGATGGTGTAAGTGACTGCCAGTTTTATCAAGTACTCTTAACATT

Ace file of the UniGene biog3_v1.0_unigene15356 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3575	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	eukaryotic translation initiation factor 2c, putative	-	-	92%
FL-Next	tr=Argonaute/Zwille-like protein; Picea glauca (White spruce) (Pinus glauca).	-	-	40%
Blast2go	argonaute protein group	-	-	96%

Source	GOs	Term	Type	Identity
Blast2go	translational initiation	GO:0006413	Biological Process	96%
Blast2go	somatic stem cell maintenance	GO:0035019	Biological Process	96%
Blast2go	miRNA metabolic process	GO:0010586	Biological Process	96%
Blast2go	leaf development	GO:0048366	Biological Process	96%
Blast2go	miRNA binding	GO:0035198	Molecular Function	96%
Blast2go	translation initiation factor activity	GO:0003743	Molecular Function	96%
Blast2go	mitochondrion	GO:0005739	Cellular Component	96%

Source	InterPros	Term	Type	Identity
Sma3	Ubiquitin	IPR000626	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Aminotransferase, class-II, pyridoxal-phosphate binding site	IPR001917	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	Argonaute/Dicer protein, PAZ	IPR003100	-	-
Sma3	Stem cell self-renewal protein Piwi	IPR003165	-	-
Sma3	Helix-hairpin-helix DNA-binding motif, class 1	IPR003583	-	-
Sma3	Domain of unknown function DUF221	IPR003864	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Domain of unknown function DUF1785	IPR014811	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q4PLA9

Fln msg: Distance to subject end: 175 aas, your sequence is shorter than subject: 121 - 959

Fln protein: NVALSCRIPLVSDIPTIIFGADVTHPENGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLFKTWQDPVRGTVFGGMIREHLISFRKATGQKPLRIIFYRDGVSDCQFYQVLLT

Protein Length: 122

Fln nts: AATGTTGCTCTAAGTTGCAGAATACCTTTAGTCAGCGATATACCAACAATAATTTTTGGAGCAGACGTAACTCATCCAGAGAATGGAGAGGACTCCAGTCCATCCATAGCAGCTGTTGTTGCTTCCCAAGATTGGCCAGAAGTCACAAAATATGCAGGCTTGGTATGCGCTCAGGCACACCGGCAAGAGCTGATTCAAGATTTATTTAAGACCTGGCAGGATCCTGTGAGGGGCACTGTATTTGGCGGCATGATAAGGGAGCACTTAATTTCTTTTAGAAAAGCAACGGGACAGAAGCCTTTACGAATCATATTTTACAGAGATGGTGTAAGTGACTGCCAGTTTTATCAAGTACTCTTAACATT

Fln Alignment:

biogeco3_mira_c10509___NVALSCRIPLVSDIPTIIFGADVTHPENGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLFKTWQDPVRGTVFGGMIREHLISFRKATG------QKPLRIIFYRDGVSDCQFYQVL
Q4PLA9__________________SVEFAHKIPKISTKPTIIIGMDVSHGSPGHADSPSISAVVSSREWPLISRYRASVRTQSPKVEMIEALYK----PLPSGKDAGMISELLVDFYQSCNPPPNVERKPQQMIVFRDGVSESQFDQVL

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
121	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain