SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene15325

Length: 220 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene15325
CCGAGACCTGGCTATCCGACTGGGCTCCGATTGTCTTGATGCTTGCTTGAAAGGTATCTACAAGGATTATGTTGCAAACTGCAAGTTTGTTAATTCAGGAAGATTGCAGCATATCCAGTTCCTTAGCAACTGTGTTGTTGAACTTTATGGAGTTGACTTGAGCAATACATATCAGCATTCCTTTGTCTTCATACGACAAATGGCAATGATTATAGAAATG

Ace file of the UniGene biog3_v1.0_unigene15325 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1338	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	Peroxidase 31, putative n=1 Tax=Ricinus communis RepID=B9RUF4_RICCO	-	-	56%
FL-Next	sp=Nucleolar complex protein 2 homolog; Arabidopsis thaliana (Mouse-ear cress).	-	-	66%
Blast2go	nucleolar complex protein 2 homolog	-	-	70%

Source	GOs	Term	Type	e value	Identity
Blast2go	metal ion binding	GO:0046872	Molecular Function	0.0	70%
Blast2go	oxidoreductase activity	GO:0016491	Molecular Function	0.0	70%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, GATA-type	IPR000679	-	-
Sma3	Plant peroxidase	IPR000823	-	-
Sma3	Lipase, GDSL	IPR001087	-	-
Sma3	Haem peroxidase, plant/fungal/bacterial	IPR002016	-	-
Sma3	Uncharacterised protein family UPF0120	IPR005343	-	-
Sma3	DTW	IPR005636	-	-
Sma3	Zinc finger, NHR/GATA-type	IPR013088	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-
Sma3	Peroxidase, active site	IPR019794	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9ZPV5

Fln msg: Distance to subject end: 392 aas, your sequence is shorter than subject: 73 - 779

Fln protein: RDLAIRLGSDCLDACLKGIYKDYVANCKFVNSGRLQHIQFLSNCVVELYGVDLSNTYQHSFVFIRQMAMIIEM

Protein Length: 74

Fln nts: CCGAGACCTGGCTATCCGACTGGGCTCCGATTGTCTTGATGCTTGCTTGAAAGGTATCTACAAGGATTATGTTGCAAACTGCAAGTTTGTTAATTCAGGAAGATTGCAGCATATCCAGTTCCTTAGCAACTGTGTTGTTGAACTTTATGGAGTTGACTTGAGCAATACATATCAGCATTCCTTTGTCTTCATACGACAAATGGCAATGATTATAGAAATG

Fln Alignment:

biogeco3_mira_c10403___RDLAIRLGSDCLDACLKGIYKDYVANCKFVNSGRLQHIQFLSNCVVELYGVDLSNTYQHSFVFIRQMAMII
Q9ZPV5__________________RDLCIRLGSDCVDDCFKGMYKAYVLNCQFVNADKLKHISFLGNCFIELLGTDISAAYQHAFVFIRQLAMIL

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
80		50		50	1.0
164		25	75		0.996473
167	75			25	0.996473
181		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain