SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene15284

Length: 252 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene15284
GTGGTATGAAGGCTTTGTAACTGAATACTTGGTTGCAACATTTGGAGACTACTTTACTGATGTGAAGTTATATATAGAAGAGAGGTCCTTTAGGAGATTTGTTGAAGCTTGCTTAGAAGAGGCAGTTGTAGTTTTCATCGATCATCTGCTTACCCAGAAAAATTACATCAGGGAGGAAACGCTTGAAAGAATGCGGGTTGATGAGGAAGTTTTCTTAGATTTTTTCAGGGAGCATATTAATTTATCTACATT

Ace file of the UniGene biog3_v1.0_unigene15284 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene29963	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	exocyst complex subunit SEC6 [Carica papaya]	-	-	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	exocyst complex subunit sec6	-	-	90%

Source	GOs	Term	Type	Identity
Blast2go	pollen germination	GO:0009846	Biological Process	90%
Blast2go	pollen tube growth	GO:0009860	Biological Process	90%
Blast2go	plasma membrane	GO:0005886	Cellular Component	90%
Blast2go	exocyst	GO:0000145	Cellular Component	90%
Blast2go	cytosol	GO:0005829	Cellular Component	90%

Source	InterPros	Term	Type	e value	Identity
Sma3	Exocyst complex component Sec6	IPR010326	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQP5

Fln msg: Distance to subject end: 98 aas, your sequence is shorter than subject: 83 - 756

Fln protein: WYEGFVTEYLVATFGDYFTDVKLYIEERSFRRFVEACLEEAVVVFIDHLLTQKNYIREETLERMRVDEEVFLDFFREHINLST

Protein Length: 84

Fln nts: GTGGTATGAAGGCTTTGTAACTGAATACTTGGTTGCAACATTTGGAGACTACTTTACTGATGTGAAGTTATATATAGAAGAGAGGTCCTTTAGGAGATTTGTTGAAGCTTGCTTAGAAGAGGCAGTTGTAGTTTTCATCGATCATCTGCTTACCCAGAAAAATTACATCAGGGAGGAAACGCTTGAAAGAATGCGGGTTGATGAGGAAGTTTTCTTAGATTTTTTCAGGGAGCATATTAATTTATCTACATT

Fln Alignment:

biogeco3_mira_c10313___WYEGFVTEYLVATFGDYFTDVKLYIEERSFRRFVEACLEEAVVVFIDHLLTQKNYIREETLERMRVDEEVFLDFFREHINLS
B8LQP5__________________WYEGTVTEYLVATFGDYFNDVKLYIEERSFRRFVEACLEEAVVVYIDHLLTQKNYIKEKTIERMRVDEEVFLDFFREYINLS

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
39	33		66		0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain