SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene15236

Length: 477 nt

UniGene Fasta

>biog3_v1.0_unigene15236
AATGTCCACATAGAAGAAGTGTTCCAAATTGGTTGGAGTCCCCAAAACGGAGCTATATTAGCATCATGTGGATCGGATAGACGACTCATGGTTTGGGACCTCAGTAGAATTGGCGATGAGCAAAATCCAGAGGATGCTGAGGAGGCACCTCCTGAACTGCTATTCATACATGGAGGACATACCAGCAAGATTTCAGACTTTTCATGGAATCCAGCTGAGGAATGGGTAATTGCCAGTGTTGCTGAAGACAACATTCTTCAAGTTTGGCAGATGTCAGAGCACATTTACAATGATGACAATGCTTCACCAACAGCTTAATAGGTTTGTTGCTGTTTGGACCAGCTAATTGATTGTTTACAGGACTTCGGAAAAATGTGGAGCCTCTGTGCCATATTCCATGGCACAGGGCTGAAGAAGCCTGAATATCAGCAGAAAGCGAGCTTGTATATTGCAGCAACGTTAATGATTCTCTACATT

Ace file of the UniGene biog3_v1.0_unigene15236

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5575	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	Nucleosome remodeling factor, p48 subunit n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RJC1_PHYPA	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	80%
Blast2go	nucleosome chromatin assembly factor group	-	-	77%

Source	GOs	Term	Type	Identity
Blast2go	trichome differentiation	GO:0010026	Biological Process	77%
Blast2go	positive regulation of cell cycle	GO:0045787	Biological Process	77%
Blast2go	regulation of flower development	GO:0009909	Biological Process	77%
Blast2go	regulation of gene expression by genetic imprinting	GO:0006349	Biological Process	77%
Blast2go	seed coat development	GO:0010214	Biological Process	77%
Blast2go	pollen development	GO:0009555	Biological Process	77%
Blast2go	heterochromatin assembly	GO:0031507	Biological Process	77%
Blast2go	leaf development	GO:0048366	Biological Process	77%
Blast2go	cell proliferation	GO:0008283	Biological Process	77%
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	77%
Blast2go		GO:0008415	Molecular Function	77%
Blast2go	protein binding	GO:0005515	Molecular Function	77%
Blast2go	CUL4 RING ubiquitin ligase complex	GO:0080008	Cellular Component	77%
Blast2go	chromatin remodeling complex	GO:0016585	Cellular Component	77%
Blast2go	chloroplast	GO:0009507	Cellular Component	77%

Source	InterPros	Term	Type	Identity
Sma3	WD40 repeat	IPR001680	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LS29

Fln msg: your sequence is shorter than subject: 106 - 421

Fln protein: NVHIEEVFQIGWSPQNGAILASCGSDRRLMVWDLSRIGDEQNPEDAEEAPPELLFIHGGHTSKISDFSWNPAEEWVIASVAEDNILQVWQMSEHIYNDDNASPTA*

Protein Length: 107

Fln nts: AATGTCCACATAGAAGAAGTGTTCCAAATTGGTTGGAGTCCCCAAAACGGAGCTATATTAGCATCATGTGGATCGGATAGACGACTCATGGTTTGGGACCTCAGTAGAATTGGCGATGAGCAAAATCCAGAGGATGCTGAGGAGGCACCTCCTGAACTGCTATTCATACATGGAGGACATACCAGCAAGATTTCAGACTTTTCATGGAATCCAGCTGAGGAATGGGTAATTGCCAGTGTTGCTGAAGACAACATTCTTCAAGTTTGGCAGATGTCAGAGCACATTTACAATGATGACAATGCTTCACCAACAGCTTAA___TAGGTTTGTTGCTGTTTGGACCAGCTAATTGATTGTTTACAGGACTTCGGAAAAATGTGGAGCCTCTGTGCCATATTCCATGGCACAGGGCTGAAGAAGCCTGAATATCAGCAGAAAGCGAGCTTGTATATTGCAGCAACGTTAATGATTCTCTACATT

Fln Alignment:

biogeco3_mira_c10169___HIEEVFQIGWSPQNGAILASCGSDRRLMVWDLSRIGXXXXXXXXXXXXXXLLFIHGGHTSKISDFSWNPAEEWVIASVAEDNILQVWQMSEHIYNDDNASP
B8LS29__________________HKEEVFQIGWSPKNETILASCSADRRLMVWDLSRIDDEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVIASVAEDNILQIWQMAENIYHDEEDMP

SNPs (tot: 3)

Position	A %	G %	T %	Probability
259	25		75	0.996473
279		66	33	0.997453
280	66		33	0.997455

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain