SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene15181

Length: 522 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene15181
AATGTTTGGTTATTGTTCCAACAACACAACCAAGCTTCTCATGTATGATTACATGCCCAATGGAAGCTTGGGTGGTTTGCTGCACGAGATGAGAGGATCACTGGATTGGGAACACAGATACAACATCATTTTGGGAGCAGCACAAGGACTTGAGTATCTACATCACCACTGTGTCCCAGCGATCGTTCACCGTGATGTCAAAGCTAACAATATATTGCTGGGTCGTCATTTCGAACCTTACCTTGCAGATTTCGGTCTCGCCAAGCTCGTGGATTCCTCTGACAATTACACCAAGTCTTCAACAAATGTGGCCGGATCCTATGGATATATTGCTCCCGAATATGGATACATGATGAAAATAACGGAGAAAAGCGACACATACAGCTACGGTGTGGTTTTACTGGAAGTGTTAACAGGAAAACAGGCGATCGATCCTTCTCTGCGCGAAGGCATGCATCTGGTCGATTGGGTACGTGAAACTCGTCGAGAAGAAAAAAGATTCAGTAGAAGTGTTGGAACATT

Ace file of the UniGene biog3_v1.0_unigene15181 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene67403	2/3

Source	Descriptions	Term	Type	Identity
AutoFact	Receptor protein kinase n=1 Tax=Pinus sylvestris RepID=Q9FEU2_PINSY	-	-	74%
FL-Next	tr=Receptor protein kinase; Pinus sylvestris (Scots pine).	-	-	70%
Blast2go	lrr receptor-like serine threonine-protein kinase rch1-like	-	-	81%

Source	GOs	Term	Type	e value	Identity
Blast2go	kinase activity	GO:0016301	Molecular Function	0.0	81%

Source	InterPros	Term	Type	Identity
Sma3	Intradiol ring-cleavage dioxygenase, C-terminal	IPR000627	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Enolpyruvate transferase domain	IPR001986	-	-
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Glucose/ribitol dehydrogenase	IPR002347	-	-
Sma3	Leucine-rich repeat, typical subtype	IPR003591	-	-
Sma3	Aminotransferases, class-I, pyridoxal-phosphate-binding site	IPR004838	-	-
Sma3	Carbamoyl-phosphate synthetase, large subunit, ATP-binding	IPR005479	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	SKG6/AXL2 alpha-helix transmembrane domain	IPR014805	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	HTH domain AraC-type, conserved site	IPR018062	-	-
Sma3	Aldo/keto reductase, conserved site	IPR018170	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q9FEU2

Fln msg: Distance to subject end: 111 aas, your sequence is shorter than subject: 173 - 1145

Fln protein: MFGYCSNNTTKLLMYDYMPNGSLGGLLHEMRGSLDWEHRYNIILGAAQGLEYLHHHCVPAIVHRDVKANNILLGRHFEPYLADFGLAKLVDSSDNYTKSSTNVAGSYGYIAPEYGYMMKITEKSDTYSYGVVLLEVLTGKQAIDPSLREGMHLVDWVRETRREEKRFSRSVGT

Protein Length: 174

Fln nts: AATGTTTGGTTATTGTTCCAACAACACAACCAAGCTTCTCATGTATGATTACATGCCCAATGGAAGCTTGGGTGGTTTGCTGCACGAGATGAGAGGATCACTGGATTGGGAACACAGATACAACATCATTTTGGGAGCAGCACAAGGACTTGAGTATCTACATCACCACTGTGTCCCAGCGATCGTTCACCGTGATGTCAAAGCTAACAATATATTGCTGGGTCGTCATTTCGAACCTTACCTTGCAGATTTCGGTCTCGCCAAGCTCGTGGATTCCTCTGACAATTACACCAAGTCTTCAACAAATGTGGCCGGATCCTATGGATATATTGCTCCCGAATATGGATACATGATGAAAATAACGGAGAAAAGCGACACATACAGCTACGGTGTGGTTTTACTGGAAGTGTTAACAGGAAAACAGGCGATCGATCCTTCTCTGCGCGAAGGCATGCATCTGGTCGATTGGGTACGTGAAACTCGTCGAGAAGAAAAAAGATTCAGTAGAAGTGTTGGAACATT

Fln Alignment:

biogeco3_mira_c9995___MFGYCSNNTTKLLMYDYMPNGSLGGLLHEMRGSLDWEHRYNIILGAAQGLEYLHHHCVPAIVHRDVKANNILLGRHFEPYLADFGLAKLVDSSDNYTKSSTNVAGSYGYIAPEYGYMMKITEKSDTYSYGVVLLEVLTGKQAIDPSLREGMHLVDWVRETRREEK
Q9FEU2__________________LLGCCTNGRSKLLMYDYMPNGSLGGLLHEKRSMLDWEIRYNIVLGVRRGLSYLHHDCRPPILHRDVKANNILLGSQYEPYLADFGLAKLVDSAD-FNRSSTTVAGSYGYIAPEYGYTMKITQKIDVYSFGVVLLEVVTGKQPIDPTIPEGVHLVEWARDAVQSNK

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
280	33	66			0.997454
281	66	33			0.997454

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain