SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene14984

Length: 469 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene14984
AGAAGAAGACATGGAGTCAACAGTTGAATTAATGGAGCCATATGGCCAGATTAAACCTGGACTGGAACTTCGCAACCCTCCTACCATTTGGACAAGGGAGTTCAAGTTTCCACATGCGGTTTGGGCTGCTGGTCGAGGTTTAGTGGCTCTTCTTCTTCCTAACTTTGATTCAGTGGATCATATATGGCTGGATGCAACTTGTTGGGAGGGTGTAGGATTTACAAAGATTACAAGACAGACAACTGGAGGATTTGAAGATTCACAAATAATAACGCGGTCATATCTAGAGAAGAAACTTGTTCTGTGCTTTGGTTCATATGTTGCTGCACAGCTTTTGCTTCCATTCGAAGAAAGTAACAACTTGTCAACATTTGAAATTGAGAGGCTCAAGAGCTAGCAACTCGCATGGTTCTTGAATATGGATGGGGTCCAGATGACAGCCATGTGGCGTATTTGACTAGCATACATT

Ace file of the UniGene biog3_v1.0_unigene14984 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2109	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	Metalloprotease m41 ftsh, putative n=1 Tax=Ricinus communis RepID=B9S7N3_RICCO	-	-	52%
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	61%
Blast2go	protein	-	-	65%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Acting on peptide bonds (peptide hydrolases), Metalloendopeptidases.	EC:3.4.24.-	-	0.0	65%
Blast2go	Adenosinetriphosphatase.	EC:3.6.1.3	-	0.0	65%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Purine metabolism	00230		0.0	65%

Source	GOs	Term	Type	Identity
Blast2go	cellular process	GO:0009987	Biological Process	65%
Blast2go	proteolysis	GO:0006508	Biological Process	65%
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	65%
Blast2go	metalloendopeptidase activity	GO:0004222	Molecular Function	65%
Blast2go	ATP binding	GO:0005524	Molecular Function	65%
Blast2go	ATPase activity	GO:0016887	Molecular Function	65%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	65%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	Peptidase M41	IPR000642	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	ATPase, AAA-type, conserved site	IPR003960	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A9TG62

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 106 aas, your sequence is shorter than subject: 132 - 863

Fln protein: EEDMESTVELMEPYGQIKPGLELRNPPTIWTREFKFPHAVWAAGRGLVALLLPNFDSVDHIWLDATCWEGVGFTKITRQTTGGFEDSQIITRSYLEKKLVLCFGSYVAAQLLLPFEESNNLSTFEIERLKS*

Protein Length: 133

Fln nts: AGAAGAAGACATGGAGTCAACAGTTGAATTAATGGAGCCATATGGCCAGATTAAACCTGGACTGGAACTTCGCAACCCTCCTACCATTTGGACAAGGGAGTTCAAGTTTCCACATGCGGTTTGGGCTGCTGGTCGAGGTTTAGTGGCTCTTCTTCTTCCTAACTTTGATTCAGTGGATCATATATGGCTGGATGCAACTTGTTGGGAGGGTGTAGGATTTACAAAGATTACAAGACAGACAACTGGAGGATTTGAAGATTCACAAATAATAACGCGGTCATATCTAGAGAAGAAACTTGTTCTGTGCTTTGGTTCATATGTTGCTGCACAGCTTTTGCTTCCATTCGAAGAAAGTAACAACTTGTCAACATTTGAAATTGAGAGGCTCAAGAGCTAGCAACTCGCATGGTTCTTGAATATGGATGGGGTCCAGATGACAGCCATGTGGCGTATTTGACTAGCATACATT

Fln Alignment:

biogeco3_mira_c9358___EEDMESTVELMEPYGQIKPGLELRNPPTIWTREFKFPHAVWAAGRGLVALLLPNFDSVDHIWLDATCWEGVGFTKITRQTTGGFEDSQIITRSYLEKKLVLCFGSYVAAQLLLPFEESNNLSTFEIE
A9TG62__________________KEDLETAVETMDVFNETRPGIELENPPVIWTREYKFPHAVWAAGRALTAFLLPSFDRLDQAWLDPSSWEGVAFTKLTKQLEAGYQETGTMTRSYYEKSLVLCFGSYVAGRLLLPFGENNNLSKGELE

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
161		66		33	0.997453
202	33			66	0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain