SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene14915

Length: 338 nt

UniGene Fasta

>biog3_v1.0_unigene14915
GTTTTGATGTGCACAGGCTTTTCAAGGAGTGCCCACATCCTGACGAGAAGCAAAGGTTAGACATCAGCAAACGCCTGAACCTTGAAACTCGACAAGTGAAATTCTGGTTCCAGAACCGTCGTACCCAGATGTAAACTCAACTTGAGAGACATGAGAATTCTATCCTAAGGCAGGAAACGAAAAGCTTCGGTCAGAGAACTTGTCAATCAGAGATGCCATGAGAAATCCCATCTGCACAAACTGTGGAGGACCTGCCGTTCTTGGCGAGATGTCCTTTGAAGAGCAGCAACTTCGCATTGAGAATGCCCGCTTAAAATTAGAGCTGGATCGATTGTGTG

Ace file of the UniGene biog3_v1.0_unigene14915

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene25807	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	Homeodomain protein HB2 n=1 Tax=Picea abies RepID=Q8S555_PICAB	-	-	92%
FL-Next	tr=Homeodomain protein HB2; Picea abies (Norway spruce) (Picea excelsa).	-	-	86%
Blast2go	homeobox-leucine zipper protein anthocyaninless 2-like	-	-	80%

Source	GOs	Term	Type	e value	Identity
Blast2go	anthocyanin accumulation in tissues in response to UV light	GO:0043481	Biological Process	0.0	80%
Blast2go	root hair cell differentiation	GO:0048765	Biological Process	0.0	80%

Source	InterPros	Term	Type	Identity
Sma3	Homeodomain	IPR001356	-	-
Sma3	Homeobox, conserved site	IPR017970	-	-
Sma3		IPR012287	-	-
Sma3	Lipid-binding START	IPR002913	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q8S555

Fln msg: Overlapping hits, possible frame ERROR between 182 and 176, Distance to subject end: 558 aas, your sequence is shorter than subject: 112 - 708

Fln protein: FDVHRLFKECPHPDEKQRLDISKRLNLETRQVKFWFQNRRTQM*TQLERHENSILRQxxxxLRSENLSIRDAMRNPICTNCGGPAVLGEMSFEEQQLRIENARLKLELDRLC

Protein Length: 113

Fln nts: GTTTTGATGTGCACAGGCTTTTCAAGGAGTGCCCACATCCTGACGAGAAGCAAAGGTTAGACATCAGCAAACGCCTGAACCTTGAAACTCGACAAGTGAAATTCTGGTTCCAGAACCGTCGTACCCAGATGTAAACTCAACTTGAGAGACATGAGAATTCTATCCTAAGGCAGxxxxxxxxxxxxCTTCGGTCAGAGAACTTGTCAATCAGAGATGCCATGAGAAATCCCATCTGCACAAACTGTGGAGGACCTGCCGTTCTTGGCGAGATGTCCTTTGAAGAGCAGCAACTTCGCATTGAGAATGCCCGCTTAAAATTAGAGCTGGATCGATTGTGTG

Fln Alignment:

biogeco3_mira_c9133___DVHRLFKECPHPDEKQRLDISKRLNLETRQVKFWFQNRRTQM*TQLERHENSILRQExxKLRSENLSIRDAMRNPICTNCGGPAVLGEMSFEEQQLRIENARLKLELDRLC
Q8S555__________________ELEALFKECPHPDEKQRLDISKRLNLETRQVKLWFQNRRTQMKTQLERHENSILRQExxKLRSENLSIRDAMRNPICTNCGGPAVLGEMSFEEQQLRIENARLKKELDRLC

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
161	25			75	0.996476
165		75		25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain