SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene14846

Length: 352 nt

UniGene Fasta

>biog3_v1.0_unigene14846
AATGTCATCTCCGCCTGCGCCGTTTGCGATGGCGCCGCTCCCATTTTCCGCAACCGACCGCTGGCGGTGATCGGGGCGGAGACTCTGCCATGGAGGAGGCGAACTTTTTGACTAAGTACGGTAGCAAAGTTTACATCATTCACAGGCGGGATGCCTTCAGGGCCAGCAAGATCATGCAGAAGAGGGCGCTGGATAACCCCAAGATCGAGGTCATATGGAATACGGAGGTCCTCAAAGCTTTTGGGAACGAGAGAGGCTTGCTCAGTGGACTCAATCTGCGGAACATAGTGAAAAATGAGGAGTCGTCGTTGGAAGTGTCAGGGCTGTTCTTCGCCATCGGGCATGAGCCGGC

Ace file of the UniGene biog3_v1.0_unigene14846

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene33367	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Thioredoxin reductase n=2 Tax=Picea sitchensis RepID=A9NXV4_PICSI	-	-	85%
FL-Next	sp=Thioredoxin reductase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	100%
Blast2go	thioredoxin reductase	-	-	87%

Source	ECs	Term	Type	e value	Identity
Blast2go	Thioredoxin-disulfide reductase.	EC:1.8.1.9	-	0.0	87%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Pyrimidine metabolism	00240		0.0	87%
Blast2go	Selenocompound metabolism	00450		0.0	87%

Source	GOs	Term	Type	Identity
Blast2go	seed development	GO:0048316	Biological Process	87%
Blast2go	cell growth	GO:0016049	Biological Process	87%
Blast2go	cell redox homeostasis	GO:0045454	Biological Process	87%
Blast2go	thioredoxin biosynthetic process	GO:0042964	Biological Process	87%
Blast2go	pollen germination	GO:0009846	Biological Process	87%
Blast2go	response to cadmium ion	GO:0046686	Biological Process	87%
Blast2go	thioredoxin-disulfide reductase activity	GO:0004791	Molecular Function	87%
Blast2go	cytosol	GO:0005829	Cellular Component	87%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	87%
Blast2go	mitochondrial matrix	GO:0005759	Cellular Component	87%

Source	InterPros	Term	Type	Identity
Sma3	FAD-dependent pyridine nucleotide-disulphide oxidoreductase	IPR013027	-	-
Sma3	Pyridine nucleotide-disulphide oxidoreductase, class-II, active site	IPR008255	-	-
Sma3	Pyridine nucleotide-disulphide oxidoreductase, NAD-binding domain	IPR001327	-	-
Sma3	Pyridine nucleotide-disulphide oxidoreductase, class-II	IPR000103	-	-
Sma3	Thioredoxin reductase	IPR005982	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NXV4

Fln msg: Overlapping hits, possible frame ERROR between 75 and 75, Distance to subject end: 73 aas, your sequence is shorter than subject: 117 - 376

Fln protein: NVISACAVCDGAAPIFRNRPLAVIxxGDSAMEEANFLTKYGSKVYIIHRRDAFRASKIMQKRALDNPKIEVIWNTEVLKAFGNERGLLSGLNLRNIVKNEESSLEVSGLFFAIGHEP

Protein Length: 118

Fln nts: AATGTCATCTCCGCCTGCGCCGTTTGCGATGGCGCCGCTCCCATTTTCCGCAACCGACCGCTGGCGGTGATCxxxxxxGGAGACTCTGCCATGGAGGAGGCGAACTTTTTGACTAAGTACGGTAGCAAAGTTTACATCATTCACAGGCGGGATGCCTTCAGGGCCAGCAAGATCATGCAGAAGAGGGCGCTGGATAACCCCAAGATCGAGGTCATATGGAATACGGAGGTCCTCAAAGCTTTTGGGAACGAGAGAGGCTTGCTCAGTGGACTCAATCTGCGGAACATAGTGAAAAATGAGGAGTCGTCGTTGGAAGTGTCAGGGCTGTTCTTCGCCATCGGGCATGAGCCGGC

Fln Alignment:

biogeco3_mira_c8931___ISACAVCDGAAPIFRNRPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRASKIMQKRALDNPKIEVIWNTEVLKAFGNERGLLSGLNLRNIVKNEESSLEVSGLFFAIGHEP
A9NXV4__________________ISACAVCDGAAPIFRNRPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRASKIMQKRTLDNPKIEVIWNTEVLKASGNESGSLSGLNLRNTVTDEVSVLEVSGLFFAIGHEP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain