SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene14829

Length: 369 nt

UniGene Fasta

>biog3_v1.0_unigene14829
CATTGCCTGCAAAATCACTAGGGACAGGACAAGTTTTCTTAGGGCGAGCATGGGGTGCTTATTCTCGCGTTATCTTCGCTTACACTTACATGGCCAACATCATCGTCCCGCAAGGATGGGATGACTGGGGTTTGGTTGAGAGGCATGGGAGCGTTGTCTATGGAGAATACCAGTGCTACGGTCCAGGTGCAAACAATAAGGACCGAGTGAAATGGTCTCAGAAACTAACAACCACAGAAGTCCAACCATATTTGGATTTAAGCTTCATAGATGCAACTCAGTGGCTTCAAGAATACTGAATAATGAGAAACGAGAGGTCCTCTTAGTTTTCAACTCCCGTTACAAAAAATGTACATCCACTGTTACATT

Ace file of the UniGene biog3_v1.0_unigene14829

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7083	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Pectinesterase n=2 Tax=Selaginella moellendorffii RepID=D8QSP7_SELML	-	-	49%
FL-Next	sp=Pectinesterase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	44%
Blast2go	pectinesterase family protein	-	-	66%

Source	GOs	Term	Type	Identity
Blast2go	hydrolase activity, acting on ester bonds	GO:0016788	Molecular Function	66%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	66%
Blast2go	cell wall	GO:0005618	Cellular Component	66%

Source	InterPros	Term	Type	Identity
Sma3	Pectinesterase, catalytic	IPR000070	-	-
Sma3	Ribosomal protein S17	IPR000266	-	-
Sma3	Ribonucleotide reductase	IPR000358	-	-
Sma3	Alcohol dehydrogenase, zinc-type, conserved site	IPR002328	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Pectin lyase fold	IPR012334	-	-
Sma3	Nucleic acid-binding, OB-fold	IPR012340	-	-
Sma3	Pectinesterase, active site	IPR018040	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LRK3

Fln msg: your sequence is shorter than subject: 99 - 344

Fln protein: LPAKSLGTGQVFLGRAWGAYSRVIFAYTYMANIIVPQGWDDWGLVERHGSVVYGEYQCYGPGANNKDRVKWSQKLTTTEVQPYLDLSFIDATQWLQEY*

Protein Length: 100

Fln nts: CATTGCCTGCAAAATCACTAGGGACAGGACAAGTTTTCTTAGGGCGAGCATGGGGTGCTTATTCTCGCGTTATCTTCGCTTACACTTACATGGCCAACATCATCGTCCCGCAAGGATGGGATGACTGGGGTTTGGTTGAGAGGCATGGGAGCGTTGTCTATGGAGAATACCAGTGCTACGGTCCAGGTGCAAACAATAAGGACCGAGTGAAATGGTCTCAGAAACTAACAACCACAGAAGTCCAACCATATTTGGATTTAAGCTTCATAGATGCAACTCAGTGGCTTCAAGAATACTGA___ATAATGAGAAACGAGAGGTCCTCTTAGTTTTCAACTCCCGTTACAAAAAATGTACATCCACTGTTACATT

Fln Alignment:

biogeco3_mira_c8868___LPAKSLGTGQVFLGRAWGAYSRVIFAYTYMANIIVPQGWDDWGLVERHGSVVYGEYQCYGPGANNKDRVKWSQKLTTTEVQPYLDLSFIDATQWLQE
B8LRK3__________________LHCKVTGTGPLYLGRAMGQYSRIVYAYSYFDDIIA--GWDDWAQTSKDGTVFFGLYNCYGPGARAAQQISWVHELTPAQAQPFLVKTFINGRHWLED

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
202	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain