SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene14484

Length: 158 nt

UniGene Fasta

>biog3_v1.0_unigene14484
CAGAATGCTGTTGTTAATAGGGACAATGCTTCTACCTGGGAGACTTTCAAGTTGTGGAGAGTCTCAGATGGCATGTATCAACTTAGAGTGTTTAGTGGTCAATTCCTAACAGCAGAAATGGAGGAGGAGGCAACGTGTCTGCAGAAGCAGATTACATT

Ace file of the UniGene biog3_v1.0_unigene14484

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1227	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	putative 1,3-beta glucanase [Oryza sativa Japonica Group] dbj\|BAD10703.1\| putative 1,3-beta glucanase [Oryza sativa Japonica Group]	-	-	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	60%
Blast2go	glucan -beta-glucosidase	-	-	71%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Glycosylases, Glycosidases, i.e. enzymes hydrolyzing O- and S-glycosyl compounds.	EC:3.2.1.-	-	0.0	71%

Source	KEGGs	Term	Identity
Blast2go	Ascorbate and aldarate metabolism	00053	71%
Blast2go	Ubiquinone and other terpenoid-quinone biosynthesis	00130	71%
Blast2go	Amino sugar and nucleotide sugar metabolism	00520	71%
Blast2go	Glycosaminoglycan degradation	00531	71%
Blast2go	Metabolic pathways	01100	71%

Source	GOs	Term	Type	Identity
Blast2go	carbohydrate metabolic process	GO:0005975	Biological Process	71%
Blast2go	hydrolase activity, hydrolyzing O-glycosyl compounds	GO:0004553	Molecular Function	71%
Blast2go	protein binding	GO:0005515	Molecular Function	71%
Blast2go	cation binding	GO:0043169	Molecular Function	71%

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 5	IPR001547	-	-
Sma3	Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ	IPR013114	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3	Glycoside hydrolase, family 5, conserved site	IPR018087	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKR6

Fln msg: Distance to subject end: 378 aas, your sequence is shorter than subject: 52 - 511

Fln protein: QNAVVNRDNASTWETFKLWRVSDGMYQLRVFSGQFLTAEMEEEATCLQKQIT

Protein Length: 53

Fln nts: CAGAATGCTGTTGTTAATAGGGACAATGCTTCTACCTGGGAGACTTTCAAGTTGTGGAGAGTCTCAGATGGCATGTATCAACTTAGAGTGTTTAGTGGTCAATTCCTAACAGCAGAAATGGAGGAGGAGGCAACGTGTCTGCAGAAGCAGATTACATT

Fln Alignment:

biogeco3_mira_c7712___QNAVVNRDNASTWETFKLWRVSDGMYQLRVFSGQFLTA
B8LKR6__________________KNLVVNRGSASGWETFRVWRVKDGTYQFRAFNKQFVRA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain