SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene14349

Length: 274 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene14349
ATTCATAATACCTTTCCCCTTTAAATCTGCAATTCTAAGCAACACCTGCATCTGCAATAACATCGTCTGTGCCAAATTCCAGGAAGCTACAAGCAGCGGAAAATAAGAAATGGAGATTACAACGGCATTGTCAATGGCCATGGTGATGATTATGGTTTTGCCATATAATTGTATGGCCGGGACGAACTACACCGTCGGGGGCAACAAGCAGACAATCTGGGCGTCGACTACGCTACGTGGACTACAGGCAAAACATTCAGTGTGGGCGATAGTC

Ace file of the UniGene biog3_v1.0_unigene14349 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene18099	3/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	uclacyanin 3-like protein [Oryza sativa]	-	-	6.0e-24	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	53%
Blast2go	blue copper protein precursor	-	-	0.0	66%

Source	InterPros	Term	Type	Identity
Sma3	Blue (type 1) copper domain	IPR000923	-	-
Sma3	Plastocyanin-like	IPR003245	-	-
Sma3	Cupredoxin	IPR008972	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P0W5

Fln msg: Separated hits, possible frame ERROR between 211 and 214, Distance to subject end: 128 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 55 - 187

Fln protein: MEITTALSMAMVMIMVLPYNCMAGTNYTVGGNKxxNLGVDYATWTTGKTFSVGDS

Protein Length: 56

Fln nts: ATTCATAATACCTTTCCCCTTTAAATCTGCAATTCTAAGCAACACCTGCATCTGCAATAACATCGTCTGTGCCAAATTCCAGGAAGCTACAAGCAGCGGAAAATAAGAA_-_ATGGAGATTACAACGGCATTGTCAATGGCCATGGTGATGATTATGGTTTTGCCATATAATTGTATGGCCGGGACGAACTACACCGTCGGGGGCAACAAGCAxxxCAATCTGGGCGTCGACTACGCTACGTGGACTACAGGCAAAACATTCAGTGTGGGCGATAGTC

Fln Alignment:

biogeco3_mira_c7263___ITTALSMAMVMIMVLPYNCMAGTNYTVGGNKQxNLGVDYATWTTGKTFSVGD
A9P0W5__________________IGIAAAISMVMMMIMPFNCMA-TDYTVGDTQQxNLGVDYGTWASGKTFAVGD

SNPs (tot: 6)

Position	A %	C %	T %	Probability
142	33		66	0.997452
145	66		33	0.997452
242	66	33		0.997452
243	66	33		0.997452
244		33	66	0.997452
245		33	66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain